JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:14 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2nuga1.name2015-04-17 16:21 0 Job name flag file
[ ]jp_LUVTm_U.align2015-04-17 17:12 147KPSIBLAST alignment in FASTA format
[TXT]jp_LUVTm_U.als2015-04-17 17:13 2.3KAlscript command file for PS/PDF output
[ ]jp_LUVTm_U.blast.gz2015-04-17 17:10 8.1MCompressed PSIBLAST output file
[TXT]jp_LUVTm_U.coils.csv2015-04-17 17:13 918 COILS output in CSV format
[ ]jp_LUVTm_U.coilseq.lupas_142015-04-17 17:13 6.2KCOILS output, window length 14
[ ]jp_LUVTm_U.coilseq.lupas_212015-04-17 17:13 6.2KCOILS output, window length 21
[ ]jp_LUVTm_U.coilseq.lupas_282015-04-17 17:13 6.2KCOILS output, window length 28
[ ]jp_LUVTm_U.concise2015-04-17 17:13 286KPrediction: coiled-coil, solvent, alignment
[ ]jp_LUVTm_U.concise.blc2015-04-17 17:13 146KBLC format prediction and alignment data
[ ]jp_LUVTm_U.concise.fasta2015-04-17 17:13 148KPrediction: coiled-coil, solvent, alignment
[ ]jp_LUVTm_U.concise.pdf2015-04-17 17:13 1.0MPDF prediction and alignment data
[ ]jp_LUVTm_U.concise.ps2015-04-17 17:13 17MPrediction: coiled-coil, solvent, alignment
[ ]jp_LUVTm_U.fasta2015-04-17 16:49 163 Input query sequence in FASTA format
[ ]jp_LUVTm_U.full_MSA.fasta2015-04-17 17:11 16MFull MSA before JPred filters in FASTA
[TXT]jp_LUVTm_U.full_MSA.fasta.noGaps.html2015-04-17 17:13 1.5MFull MSA before JPred filters in FASTA
[TXT]jp_LUVTm_U.full_MSA.fasta.withGaps.html2015-04-17 17:13 34MFull MSA before JPred filters in FASTA
[ ]jp_LUVTm_U.hmm2015-04-17 17:13 28KHHMer2 profile of the alignment
[TXT]jp_LUVTm_U.html2015-04-17 17:13 333KHTML prediction and alignment data
[ ]jp_LUVTm_U.input2015-04-17 16:21 155 Raw input data for analysis
[ ]jp_LUVTm_U.jalview2015-04-17 17:13 3.8KJalview annotation file for alignment
[ ]jp_LUVTm_U.jnet2015-04-17 17:13 5.5KJnet secondary structure output
[TXT]jp_LUVTm_U.profile2015-04-17 17:09 24KPSIBLAST profile from alignment
[ ]jp_LUVTm_U.pssm2015-04-17 17:12 32KPSIBLAST PSSM for Jnet
[TXT]jp_LUVTm_U.results.html2016-02-15 12:20 69KJPred results page
[TXT]jp_LUVTm_U.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_LUVTm_U.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_LUVTm_U.seq2015-04-17 16:21 163 Sequence data file
[TXT]jp_LUVTm_U.simple.html2015-04-17 17:13 1.3KBrief HTML: sequence and prediction only
[TXT]jp_LUVTm_U.svg.html2015-04-17 17:14 61KJalview SVG summary of results
[ ]jp_LUVTm_U.tar.gz2015-04-17 17:14 13MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.