A Protein Secondary Structure Prediction Server
| Name | Last modified | Size | Description | |
|---|---|---|---|---|
![[TXT]](/icons/text.gif){kind=icon} | LOG | 2015-04-17 20:01 | 4.7K | JPred server log file |
| README | 2016-02-15 12:20 | 2.1K | Results file descriptions |
| d2nxpa1.name | 2015-04-17 18:10 | 0 | Job name flag file |
![[ ]](/icons/unknown.gif){kind=icon} | jp_AHgqldp.align | 2015-04-17 20:00 | 49K | PSIBLAST alignment in FASTA format |
| jp_AHgqldp.als | 2015-04-17 20:01 | 2.9K | Alscript command file for PS/PDF output |
![[ ]](/icons/compressed.gif){kind=icon} | jp_AHgqldp.blast.gz | 2015-04-17 20:00 | 294K | Compressed PSIBLAST output file |
| jp_AHgqldp.coils.csv | 2015-04-17 20:00 | 924 | COILS output in CSV format |
| jp_AHgqldp.coilseq.lupas_14 | 2015-04-17 20:00 | 6.3K | COILS output, window length 14 |
| jp_AHgqldp.coilseq.lupas_21 | 2015-04-17 20:00 | 6.3K | COILS output, window length 21 |
| jp_AHgqldp.coilseq.lupas_28 | 2015-04-17 20:00 | 6.3K | COILS output, window length 28 |
| jp_AHgqldp.concise | 2015-04-17 20:01 | 101K | Prediction: coiled-coil, solvent, alignment |
| jp_AHgqldp.concise.blc | 2015-04-17 20:01 | 51K | BLC format prediction and alignment data |
| jp_AHgqldp.concise.fasta | 2015-04-17 20:01 | 51K | Prediction: coiled-coil, solvent, alignment |
![[ ]](/icons/layout.gif){kind=icon} | jp_AHgqldp.concise.pdf | 2015-04-17 20:01 | 355K | PDF prediction and alignment data |
| jp_AHgqldp.concise.ps | 2015-04-17 20:01 | 6.1M | Prediction: coiled-coil, solvent, alignment |
| jp_AHgqldp.fasta | 2015-04-17 19:51 | 164 | Input query sequence in FASTA format |
| jp_AHgqldp.full_MSA.fasta | 2015-04-17 20:00 | 437K | Full MSA before JPred filters in FASTA |
| jp_AHgqldp.full_MSA.fasta.noGaps.html | 2015-04-17 20:01 | 145K | Full MSA before JPred filters in FASTA |
| jp_AHgqldp.full_MSA.fasta.withGaps.html | 2015-04-17 20:01 | 1.5M | Full MSA before JPred filters in FASTA |
| jp_AHgqldp.hmm | 2015-04-17 20:00 | 28K | HHMer2 profile of the alignment |
| jp_AHgqldp.html | 2015-04-17 20:01 | 123K | HTML prediction and alignment data |
| jp_AHgqldp.input | 2015-04-17 18:10 | 156 | Raw input data for analysis |
| jp_AHgqldp.jalview | 2015-04-17 20:01 | 3.9K | Jalview annotation file for alignment |
| jp_AHgqldp.jnet | 2015-04-17 20:00 | 5.5K | Jnet secondary structure output |
| jp_AHgqldp.profile | 2015-04-17 19:58 | 24K | PSIBLAST profile from alignment |
| jp_AHgqldp.pssm | 2015-04-17 20:00 | 32K | PSIBLAST PSSM for Jnet |
| jp_AHgqldp.results.html | 2016-02-15 12:20 | 72K | JPred results page |
| jp_AHgqldp.results_jalview.html | 2016-02-24 17:18 | 13K | Jalview results options |
| jp_AHgqldp.results_jalview_app.html | 2016-02-24 17:18 | 16K | HTML prediction and alignment data |
| jp_AHgqldp.seq | 2015-04-17 18:10 | 164 | Sequence data file |
| jp_AHgqldp.simple.html | 2015-04-17 20:01 | 1.4K | Brief HTML: sequence and prediction only |
![[TXT]](jp_AHgqldp.svg.html) | jp_AHgqldp.svg.html | 2015-04-17 20:01 | 63K | Jalview SVG summary of results |
| jp_AHgqldp.tar.gz | 2015-04-17 20:01 | 917K | Archive containing complete results |
