JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:41 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2o37a_.name2015-04-17 15:42 0 Job name flag file
[ ]jp_nDkEtpG.align2015-04-17 16:40 74KPSIBLAST alignment in FASTA format
[TXT]jp_nDkEtpG.als2015-04-17 16:40 1.7KAlscript command file for PS/PDF output
[ ]jp_nDkEtpG.blast.gz2015-04-17 16:39 4.5MCompressed PSIBLAST output file
[TXT]jp_nDkEtpG.coils.csv2015-04-17 16:40 516 COILS output in CSV format
[ ]jp_nDkEtpG.coilseq.lupas_142015-04-17 16:40 3.4KCOILS output, window length 14
[ ]jp_nDkEtpG.coilseq.lupas_212015-04-17 16:40 3.4KCOILS output, window length 21
[ ]jp_nDkEtpG.coilseq.lupas_282015-04-17 16:40 3.4KCOILS output, window length 28
[ ]jp_nDkEtpG.concise2015-04-17 16:40 142KPrediction: coiled-coil, solvent, alignment
[ ]jp_nDkEtpG.concise.blc2015-04-17 16:40 74KBLC format prediction and alignment data
[ ]jp_nDkEtpG.concise.fasta2015-04-17 16:40 75KPrediction: coiled-coil, solvent, alignment
[ ]jp_nDkEtpG.concise.pdf2015-04-17 16:40 382KPDF prediction and alignment data
[ ]jp_nDkEtpG.concise.ps2015-04-17 16:40 7.6MPrediction: coiled-coil, solvent, alignment
[ ]jp_nDkEtpG.fasta2015-04-17 15:54 95 Input query sequence in FASTA format
[ ]jp_nDkEtpG.full_MSA.fasta2015-04-17 16:40 7.5MFull MSA before JPred filters in FASTA
[TXT]jp_nDkEtpG.full_MSA.fasta.noGaps.html2015-04-17 16:41 2.1MFull MSA before JPred filters in FASTA
[TXT]jp_nDkEtpG.full_MSA.fasta.withGaps.html2015-04-17 16:41 23MFull MSA before JPred filters in FASTA
[ ]jp_nDkEtpG.hmm2015-04-17 16:40 15KHHMer2 profile of the alignment
[TXT]jp_nDkEtpG.html2015-04-17 16:40 227KHTML prediction and alignment data
[ ]jp_nDkEtpG.input2015-04-17 15:42 88 Raw input data for analysis
[ ]jp_nDkEtpG.jalview2015-04-17 16:40 2.4KJalview annotation file for alignment
[ ]jp_nDkEtpG.jnet2015-04-17 16:40 3.0KJnet secondary structure output
[TXT]jp_nDkEtpG.profile2015-04-17 16:35 13KPSIBLAST profile from alignment
[ ]jp_nDkEtpG.pssm2015-04-17 16:40 17KPSIBLAST PSSM for Jnet
[TXT]jp_nDkEtpG.results.html2016-02-15 12:20 42KJPred results page
[TXT]jp_nDkEtpG.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_nDkEtpG.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_nDkEtpG.seq2015-04-17 15:42 95 Sequence data file
[TXT]jp_nDkEtpG.simple.html2015-04-17 16:40 1.1KBrief HTML: sequence and prediction only
[TXT]jp_nDkEtpG.svg.html2015-04-17 16:41 34KJalview SVG summary of results
[ ]jp_nDkEtpG.tar.gz2015-04-17 16:41 7.1MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.