JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:11 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2o3bb_.name2015-04-17 15:42 0 Job name flag file
[ ]jp_22cfDh7.align2015-04-17 16:11 24KPSIBLAST alignment in FASTA format
[TXT]jp_22cfDh7.als2015-04-17 16:11 2.7KAlscript command file for PS/PDF output
[ ]jp_22cfDh7.blast.gz2015-04-17 16:11 58KCompressed PSIBLAST output file
[TXT]jp_22cfDh7.coils.csv2015-04-17 16:11 840 COILS output in CSV format
[ ]jp_22cfDh7.coilseq.lupas_142015-04-17 16:11 5.7KCOILS output, window length 14
[ ]jp_22cfDh7.coilseq.lupas_212015-04-17 16:11 5.7KCOILS output, window length 21
[ ]jp_22cfDh7.coilseq.lupas_282015-04-17 16:11 5.7KCOILS output, window length 28
[ ]jp_22cfDh7.concise2015-04-17 16:11 52KPrediction: coiled-coil, solvent, alignment
[ ]jp_22cfDh7.concise.blc2015-04-17 16:11 26KBLC format prediction and alignment data
[ ]jp_22cfDh7.concise.fasta2015-04-17 16:11 26KPrediction: coiled-coil, solvent, alignment
[ ]jp_22cfDh7.concise.pdf2015-04-17 16:11 174KPDF prediction and alignment data
[ ]jp_22cfDh7.concise.ps2015-04-17 16:11 3.1MPrediction: coiled-coil, solvent, alignment
[ ]jp_22cfDh7.fasta2015-04-17 15:54 149 Input query sequence in FASTA format
[ ]jp_22cfDh7.full_MSA.fasta2015-04-17 16:11 108KFull MSA before JPred filters in FASTA
[TXT]jp_22cfDh7.full_MSA.fasta.noGaps.html2015-04-17 16:11 51KFull MSA before JPred filters in FASTA
[TXT]jp_22cfDh7.full_MSA.fasta.withGaps.html2015-04-17 16:11 510KFull MSA before JPred filters in FASTA
[ ]jp_22cfDh7.hmm2015-04-17 16:11 25KHHMer2 profile of the alignment
[TXT]jp_22cfDh7.html2015-04-17 16:11 70KHTML prediction and alignment data
[ ]jp_22cfDh7.input2015-04-17 15:42 142 Raw input data for analysis
[ ]jp_22cfDh7.jalview2015-04-17 16:11 3.5KJalview annotation file for alignment
[ ]jp_22cfDh7.jnet2015-04-17 16:11 5.0KJnet secondary structure output
[TXT]jp_22cfDh7.profile2015-04-17 16:10 22KPSIBLAST profile from alignment
[ ]jp_22cfDh7.pssm2015-04-17 16:11 29KPSIBLAST PSSM for Jnet
[TXT]jp_22cfDh7.results.html2016-02-15 12:20 64KJPred results page
[TXT]jp_22cfDh7.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_22cfDh7.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_22cfDh7.seq2015-04-17 15:42 149 Sequence data file
[TXT]jp_22cfDh7.simple.html2015-04-17 16:11 1.4KBrief HTML: sequence and prediction only
[TXT]jp_22cfDh7.svg.html2015-04-17 16:11 56KJalview SVG summary of results
[ ]jp_22cfDh7.tar.gz2015-04-17 16:11 361KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.