JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:56 4.9KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2o9ux_.name2015-04-17 18:09 0 Job name flag file
[ ]jp_N2fdt_4.align2015-04-17 19:56 218 PSIBLAST alignment in FASTA format
[TXT]jp_N2fdt_4.als2015-04-17 19:56 2.3KAlscript command file for PS/PDF output
[ ]jp_N2fdt_4.blast.gz2015-04-17 19:56 1.6KCompressed PSIBLAST output file
[TXT]jp_N2fdt_4.coils.csv2015-04-17 19:56 600 COILS output in CSV format
[ ]jp_N2fdt_4.coilseq.lupas_142015-04-17 19:56 4.0KCOILS output, window length 14
[ ]jp_N2fdt_4.coilseq.lupas_212015-04-17 19:56 4.0KCOILS output, window length 21
[ ]jp_N2fdt_4.coilseq.lupas_282015-04-17 19:56 4.0KCOILS output, window length 28
[ ]jp_N2fdt_4.concise2015-04-17 19:56 4.5KPrediction: coiled-coil, solvent, alignment
[ ]jp_N2fdt_4.concise.blc2015-04-17 19:56 1.7KBLC format prediction and alignment data
[ ]jp_N2fdt_4.concise.fasta2015-04-17 19:56 1.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_N2fdt_4.concise.pdf2015-04-17 19:56 11KPDF prediction and alignment data
[ ]jp_N2fdt_4.concise.ps2015-04-17 19:56 183KPrediction: coiled-coil, solvent, alignment
[ ]jp_N2fdt_4.fasta2015-04-17 19:50 109 Input query sequence in FASTA format
[ ]jp_N2fdt_4.full_MSA.fasta2015-04-17 19:56 335 Full MSA before JPred filters in FASTA
[TXT]jp_N2fdt_4.full_MSA.fasta.noGaps.html2015-04-17 19:56 738 Full MSA before JPred filters in FASTA
[TXT]jp_N2fdt_4.full_MSA.fasta.withGaps.html2015-04-17 19:56 790 Full MSA before JPred filters in FASTA
[ ]jp_N2fdt_4.hmm2015-04-17 19:56 18KHHMer2 profile of the alignment
[TXT]jp_N2fdt_4.html2015-04-17 19:56 9.4KHTML prediction and alignment data
[ ]jp_N2fdt_4.input2015-04-17 18:09 102 Raw input data for analysis
[ ]jp_N2fdt_4.jalview2015-04-17 19:56 2.7KJalview annotation file for alignment
[ ]jp_N2fdt_4.jnet2015-04-17 19:56 3.5KJnet secondary structure output
[TXT]jp_N2fdt_4.profile2015-04-17 19:54 16KPSIBLAST profile from alignment
[ ]jp_N2fdt_4.pssm2015-04-17 19:56 20KPSIBLAST PSSM for Jnet
[TXT]jp_N2fdt_4.results.html2016-02-15 12:20 49KJPred results page
[TXT]jp_N2fdt_4.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_N2fdt_4.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_N2fdt_4.seq2015-04-17 18:09 109 Sequence data file
[TXT]jp_N2fdt_4.simple.html2015-04-17 19:56 1.2KBrief HTML: sequence and prediction only
[TXT]jp_N2fdt_4.svg.html2015-04-17 19:56 41KJalview SVG summary of results
[ ]jp_N2fdt_4.tar.gz2015-04-17 19:56 32KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.