JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

Home
REST API
About
F.A.Q.
Help & Tutorials
Monitoring
Contact
Publications
 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:52 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2ob5a1.name2015-04-17 17:32 0 Job name flag file
[ ]jp_H7gSTdo.align2015-04-17 18:52 155KPSIBLAST alignment in FASTA format
[TXT]jp_H7gSTdo.als2015-04-17 18:52 2.6KAlscript command file for PS/PDF output
[ ]jp_H7gSTdo.blast.gz2015-04-17 18:51 492KCompressed PSIBLAST output file
[TXT]jp_H7gSTdo.coils.csv2015-04-17 18:52 912 COILS output in CSV format
[ ]jp_H7gSTdo.coilseq.lupas_142015-04-17 18:52 6.2KCOILS output, window length 14
[ ]jp_H7gSTdo.coilseq.lupas_212015-04-17 18:52 6.2KCOILS output, window length 21
[ ]jp_H7gSTdo.coilseq.lupas_282015-04-17 18:52 6.2KCOILS output, window length 28
[ ]jp_H7gSTdo.concise2015-04-17 18:52 302KPrediction: coiled-coil, solvent, alignment
[ ]jp_H7gSTdo.concise.blc2015-04-17 18:52 155KBLC format prediction and alignment data
[ ]jp_H7gSTdo.concise.fasta2015-04-17 18:52 157KPrediction: coiled-coil, solvent, alignment
[ ]jp_H7gSTdo.concise.pdf2015-04-17 18:52 1.0MPDF prediction and alignment data
[ ]jp_H7gSTdo.concise.ps2015-04-17 18:52 18MPrediction: coiled-coil, solvent, alignment
[ ]jp_H7gSTdo.fasta2015-04-17 18:48 162 Input query sequence in FASTA format
[ ]jp_H7gSTdo.full_MSA.fasta2015-04-17 18:51 641KFull MSA before JPred filters in FASTA
[TXT]jp_H7gSTdo.full_MSA.fasta.noGaps.html2015-04-17 18:52 391KFull MSA before JPred filters in FASTA
[TXT]jp_H7gSTdo.full_MSA.fasta.withGaps.html2015-04-17 18:52 3.2MFull MSA before JPred filters in FASTA
[ ]jp_H7gSTdo.hmm2015-04-17 18:52 28KHHMer2 profile of the alignment
[TXT]jp_H7gSTdo.html2015-04-17 18:52 350KHTML prediction and alignment data
[ ]jp_H7gSTdo.input2015-04-17 17:32 154 Raw input data for analysis
[ ]jp_H7gSTdo.jalview2015-04-17 18:52 3.8KJalview annotation file for alignment
[ ]jp_H7gSTdo.jnet2015-04-17 18:52 5.4KJnet secondary structure output
[TXT]jp_H7gSTdo.profile2015-04-17 18:50 24KPSIBLAST profile from alignment
[ ]jp_H7gSTdo.pssm2015-04-17 18:52 32KPSIBLAST PSSM for Jnet
[TXT]jp_H7gSTdo.results.html2016-02-15 12:20 68KJPred results page
[TXT]jp_H7gSTdo.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_H7gSTdo.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_H7gSTdo.seq2015-04-17 17:32 162 Sequence data file
[TXT]jp_H7gSTdo.simple.html2015-04-17 18:52 1.4KBrief HTML: sequence and prediction only
[TXT]jp_H7gSTdo.svg.html2015-04-17 18:52 60KJalview SVG summary of results
[ ]jp_H7gSTdo.tar.gz2015-04-17 18:52 2.1MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.