JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:55 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2ogfa_.name2015-04-17 17:33 0 Job name flag file
[ ]jp_tYl5JhV.align2015-04-17 18:55 15KPSIBLAST alignment in FASTA format
[TXT]jp_tYl5JhV.als2015-04-17 18:55 2.4KAlscript command file for PS/PDF output
[ ]jp_tYl5JhV.blast.gz2015-04-17 18:55 45KCompressed PSIBLAST output file
[TXT]jp_tYl5JhV.coils.csv2015-04-17 18:55 756 COILS output in CSV format
[ ]jp_tYl5JhV.coilseq.lupas_142015-04-17 18:55 5.1KCOILS output, window length 14
[ ]jp_tYl5JhV.coilseq.lupas_212015-04-17 18:55 5.1KCOILS output, window length 21
[ ]jp_tYl5JhV.coilseq.lupas_282015-04-17 18:55 5.1KCOILS output, window length 28
[ ]jp_tYl5JhV.concise2015-04-17 18:55 34KPrediction: coiled-coil, solvent, alignment
[ ]jp_tYl5JhV.concise.blc2015-04-17 18:55 17KBLC format prediction and alignment data
[ ]jp_tYl5JhV.concise.fasta2015-04-17 18:55 16KPrediction: coiled-coil, solvent, alignment
[ ]jp_tYl5JhV.concise.pdf2015-04-17 18:55 110KPDF prediction and alignment data
[ ]jp_tYl5JhV.concise.ps2015-04-17 18:55 1.9MPrediction: coiled-coil, solvent, alignment
[ ]jp_tYl5JhV.fasta2015-04-17 18:48 135 Input query sequence in FASTA format
[ ]jp_tYl5JhV.full_MSA.fasta2015-04-17 18:55 42KFull MSA before JPred filters in FASTA
[TXT]jp_tYl5JhV.full_MSA.fasta.noGaps.html2015-04-17 18:55 40KFull MSA before JPred filters in FASTA
[TXT]jp_tYl5JhV.full_MSA.fasta.withGaps.html2015-04-17 18:55 146KFull MSA before JPred filters in FASTA
[ ]jp_tYl5JhV.hmm2015-04-17 18:55 23KHHMer2 profile of the alignment
[TXT]jp_tYl5JhV.html2015-04-17 18:55 51KHTML prediction and alignment data
[ ]jp_tYl5JhV.input2015-04-17 17:33 128 Raw input data for analysis
[ ]jp_tYl5JhV.jalview2015-04-17 18:55 3.3KJalview annotation file for alignment
[ ]jp_tYl5JhV.jnet2015-04-17 18:55 4.5KJnet secondary structure output
[TXT]jp_tYl5JhV.profile2015-04-17 18:52 20KPSIBLAST profile from alignment
[ ]jp_tYl5JhV.pssm2015-04-17 18:55 26KPSIBLAST PSSM for Jnet
[TXT]jp_tYl5JhV.results.html2016-02-15 12:20 58KJPred results page
[TXT]jp_tYl5JhV.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_tYl5JhV.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_tYl5JhV.seq2015-04-17 17:33 135 Sequence data file
[TXT]jp_tYl5JhV.simple.html2015-04-17 18:55 1.3KBrief HTML: sequence and prediction only
[TXT]jp_tYl5JhV.svg.html2015-04-17 18:55 50KJalview SVG summary of results
[ ]jp_tYl5JhV.tar.gz2015-04-17 18:55 225KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.