JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:59 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2ohwa1.name2015-04-17 15:43 0 Job name flag file
[ ]jp_oWkP0ih.align2015-04-17 15:58 37KPSIBLAST alignment in FASTA format
[TXT]jp_oWkP0ih.als2015-04-17 15:58 2.7KAlscript command file for PS/PDF output
[ ]jp_oWkP0ih.blast.gz2015-04-17 15:58 103KCompressed PSIBLAST output file
[TXT]jp_oWkP0ih.coils.csv2015-04-17 15:58 798 COILS output in CSV format
[ ]jp_oWkP0ih.coilseq.lupas_142015-04-17 15:58 5.4KCOILS output, window length 14
[ ]jp_oWkP0ih.coilseq.lupas_212015-04-17 15:58 5.4KCOILS output, window length 21
[ ]jp_oWkP0ih.coilseq.lupas_282015-04-17 15:58 5.4KCOILS output, window length 28
[ ]jp_oWkP0ih.concise2015-04-17 15:58 75KPrediction: coiled-coil, solvent, alignment
[ ]jp_oWkP0ih.concise.blc2015-04-17 15:58 38KBLC format prediction and alignment data
[ ]jp_oWkP0ih.concise.fasta2015-04-17 15:58 38KPrediction: coiled-coil, solvent, alignment
[ ]jp_oWkP0ih.concise.pdf2015-04-17 15:59 253KPDF prediction and alignment data
[ ]jp_oWkP0ih.concise.ps2015-04-17 15:58 4.4MPrediction: coiled-coil, solvent, alignment
[ ]jp_oWkP0ih.fasta2015-04-17 15:55 142 Input query sequence in FASTA format
[ ]jp_oWkP0ih.full_MSA.fasta2015-04-17 15:58 111KFull MSA before JPred filters in FASTA
[TXT]jp_oWkP0ih.full_MSA.fasta.noGaps.html2015-04-17 15:59 87KFull MSA before JPred filters in FASTA
[TXT]jp_oWkP0ih.full_MSA.fasta.withGaps.html2015-04-17 15:59 625KFull MSA before JPred filters in FASTA
[ ]jp_oWkP0ih.hmm2015-04-17 15:58 24KHHMer2 profile of the alignment
[TXT]jp_oWkP0ih.html2015-04-17 15:58 97KHTML prediction and alignment data
[ ]jp_oWkP0ih.input2015-04-17 15:43 135 Raw input data for analysis
[ ]jp_oWkP0ih.jalview2015-04-17 15:58 3.4KJalview annotation file for alignment
[ ]jp_oWkP0ih.jnet2015-04-17 15:58 4.7KJnet secondary structure output
[TXT]jp_oWkP0ih.profile2015-04-17 15:58 21KPSIBLAST profile from alignment
[ ]jp_oWkP0ih.pssm2015-04-17 15:58 28KPSIBLAST PSSM for Jnet
[TXT]jp_oWkP0ih.results.html2016-02-15 12:20 62KJPred results page
[TXT]jp_oWkP0ih.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_oWkP0ih.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_oWkP0ih.seq2015-04-17 15:43 142 Sequence data file
[TXT]jp_oWkP0ih.simple.html2015-04-17 15:58 1.4KBrief HTML: sequence and prediction only
[TXT]jp_oWkP0ih.svg.html2015-04-17 15:59 54KJalview SVG summary of results
[ ]jp_oWkP0ih.tar.gz2015-04-17 15:59 515KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.