JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

Home
REST API
About
F.A.Q.
Help & Tutorials
Monitoring
Contact
Publications
 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:05 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2ouxa1.name2015-04-17 15:43 0 Job name flag file
[ ]jp_ZQNWIEZ.align2015-04-17 16:05 127KPSIBLAST alignment in FASTA format
[TXT]jp_ZQNWIEZ.als2015-04-17 16:05 2.7KAlscript command file for PS/PDF output
[ ]jp_ZQNWIEZ.blast.gz2015-04-17 16:04 1.2MCompressed PSIBLAST output file
[TXT]jp_ZQNWIEZ.coils.csv2015-04-17 16:05 810 COILS output in CSV format
[ ]jp_ZQNWIEZ.coilseq.lupas_142015-04-17 16:05 5.5KCOILS output, window length 14
[ ]jp_ZQNWIEZ.coilseq.lupas_212015-04-17 16:05 5.5KCOILS output, window length 21
[ ]jp_ZQNWIEZ.coilseq.lupas_282015-04-17 16:05 5.5KCOILS output, window length 28
[ ]jp_ZQNWIEZ.concise2015-04-17 16:05 249KPrediction: coiled-coil, solvent, alignment
[ ]jp_ZQNWIEZ.concise.blc2015-04-17 16:05 128KBLC format prediction and alignment data
[ ]jp_ZQNWIEZ.concise.fasta2015-04-17 16:05 129KPrediction: coiled-coil, solvent, alignment
[ ]jp_ZQNWIEZ.concise.pdf2015-04-17 16:05 898KPDF prediction and alignment data
[ ]jp_ZQNWIEZ.concise.ps2015-04-17 16:05 15MPrediction: coiled-coil, solvent, alignment
[ ]jp_ZQNWIEZ.fasta2015-04-17 15:56 144 Input query sequence in FASTA format
[ ]jp_ZQNWIEZ.full_MSA.fasta2015-04-17 16:04 2.2MFull MSA before JPred filters in FASTA
[TXT]jp_ZQNWIEZ.full_MSA.fasta.noGaps.html2015-04-17 16:05 826KFull MSA before JPred filters in FASTA
[TXT]jp_ZQNWIEZ.full_MSA.fasta.withGaps.html2015-04-17 16:05 11MFull MSA before JPred filters in FASTA
[ ]jp_ZQNWIEZ.hmm2015-04-17 16:05 24KHHMer2 profile of the alignment
[TXT]jp_ZQNWIEZ.html2015-04-17 16:05 309KHTML prediction and alignment data
[ ]jp_ZQNWIEZ.input2015-04-17 15:43 137 Raw input data for analysis
[ ]jp_ZQNWIEZ.jalview2015-04-17 16:05 3.5KJalview annotation file for alignment
[ ]jp_ZQNWIEZ.jnet2015-04-17 16:05 4.8KJnet secondary structure output
[TXT]jp_ZQNWIEZ.profile2015-04-17 16:01 21KPSIBLAST profile from alignment
[ ]jp_ZQNWIEZ.pssm2015-04-17 16:05 28KPSIBLAST PSSM for Jnet
[TXT]jp_ZQNWIEZ.results.html2016-02-15 12:20 64KJPred results page
[TXT]jp_ZQNWIEZ.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_ZQNWIEZ.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_ZQNWIEZ.seq2015-04-17 15:43 144 Sequence data file
[TXT]jp_ZQNWIEZ.simple.html2015-04-17 16:05 1.4KBrief HTML: sequence and prediction only
[TXT]jp_ZQNWIEZ.svg.html2015-04-17 16:05 56KJalview SVG summary of results
[ ]jp_ZQNWIEZ.tar.gz2015-04-17 16:05 3.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.