JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:56 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2ox7a1.name2015-04-17 18:46 0 Job name flag file
[ ]jp_g9e1TC7.align2015-04-17 20:55 131KPSIBLAST alignment in FASTA format
[TXT]jp_g9e1TC7.als2015-04-17 20:55 2.9KAlscript command file for PS/PDF output
[ ]jp_g9e1TC7.blast.gz2015-04-17 20:55 578KCompressed PSIBLAST output file
[TXT]jp_g9e1TC7.coils.csv2015-04-17 20:55 888 COILS output in CSV format
[ ]jp_g9e1TC7.coilseq.lupas_142015-04-17 20:55 6.0KCOILS output, window length 14
[ ]jp_g9e1TC7.coilseq.lupas_212015-04-17 20:55 6.0KCOILS output, window length 21
[ ]jp_g9e1TC7.coilseq.lupas_282015-04-17 20:55 6.0KCOILS output, window length 28
[ ]jp_g9e1TC7.concise2015-04-17 20:55 258KPrediction: coiled-coil, solvent, alignment
[ ]jp_g9e1TC7.concise.blc2015-04-17 20:55 132KBLC format prediction and alignment data
[ ]jp_g9e1TC7.concise.fasta2015-04-17 20:55 132KPrediction: coiled-coil, solvent, alignment
[ ]jp_g9e1TC7.concise.pdf2015-04-17 20:55 842KPDF prediction and alignment data
[ ]jp_g9e1TC7.concise.ps2015-04-17 20:55 15MPrediction: coiled-coil, solvent, alignment
[ ]jp_g9e1TC7.fasta2015-04-17 20:49 157 Input query sequence in FASTA format
[ ]jp_g9e1TC7.full_MSA.fasta2015-04-17 20:55 1.1MFull MSA before JPred filters in FASTA
[TXT]jp_g9e1TC7.full_MSA.fasta.noGaps.html2015-04-17 20:55 241KFull MSA before JPred filters in FASTA
[TXT]jp_g9e1TC7.full_MSA.fasta.withGaps.html2015-04-17 20:55 3.5MFull MSA before JPred filters in FASTA
[ ]jp_g9e1TC7.hmm2015-04-17 20:55 27KHHMer2 profile of the alignment
[TXT]jp_g9e1TC7.html2015-04-17 20:55 301KHTML prediction and alignment data
[ ]jp_g9e1TC7.input2015-04-17 18:46 150 Raw input data for analysis
[ ]jp_g9e1TC7.jalview2015-04-17 20:55 3.6KJalview annotation file for alignment
[ ]jp_g9e1TC7.jnet2015-04-17 20:55 5.3KJnet secondary structure output
[TXT]jp_g9e1TC7.profile2015-04-17 20:52 23KPSIBLAST profile from alignment
[ ]jp_g9e1TC7.pssm2015-04-17 20:55 31KPSIBLAST PSSM for Jnet
[TXT]jp_g9e1TC7.results.html2016-02-15 12:20 66KJPred results page
[TXT]jp_g9e1TC7.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_g9e1TC7.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_g9e1TC7.seq2015-04-17 18:46 157 Sequence data file
[TXT]jp_g9e1TC7.simple.html2015-04-17 20:55 1.4KBrief HTML: sequence and prediction only
[TXT]jp_g9e1TC7.svg.html2015-04-17 20:56 58KJalview SVG summary of results
[ ]jp_g9e1TC7.tar.gz2015-04-17 20:56 1.9MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.