JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:53 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2p6va1.name2015-04-17 16:21 0 Job name flag file
[ ]jp_weaYJNw.align2015-04-17 16:53 10KPSIBLAST alignment in FASTA format
[TXT]jp_weaYJNw.als2015-04-17 16:53 1.8KAlscript command file for PS/PDF output
[ ]jp_weaYJNw.blast.gz2015-04-17 16:52 95KCompressed PSIBLAST output file
[TXT]jp_weaYJNw.coils.csv2015-04-17 16:53 612 COILS output in CSV format
[ ]jp_weaYJNw.coilseq.lupas_142015-04-17 16:53 4.1KCOILS output, window length 14
[ ]jp_weaYJNw.coilseq.lupas_212015-04-17 16:53 4.1KCOILS output, window length 21
[ ]jp_weaYJNw.coilseq.lupas_282015-04-17 16:53 4.1KCOILS output, window length 28
[ ]jp_weaYJNw.concise2015-04-17 16:53 23KPrediction: coiled-coil, solvent, alignment
[ ]jp_weaYJNw.concise.blc2015-04-17 16:53 11KBLC format prediction and alignment data
[ ]jp_weaYJNw.concise.fasta2015-04-17 16:53 11KPrediction: coiled-coil, solvent, alignment
[ ]jp_weaYJNw.concise.pdf2015-04-17 16:53 75KPDF prediction and alignment data
[ ]jp_weaYJNw.concise.ps2015-04-17 16:53 1.3MPrediction: coiled-coil, solvent, alignment
[ ]jp_weaYJNw.fasta2015-04-17 16:51 111 Input query sequence in FASTA format
[ ]jp_weaYJNw.full_MSA.fasta2015-04-17 16:52 104KFull MSA before JPred filters in FASTA
[TXT]jp_weaYJNw.full_MSA.fasta.noGaps.html2015-04-17 16:53 124KFull MSA before JPred filters in FASTA
[TXT]jp_weaYJNw.full_MSA.fasta.withGaps.html2015-04-17 16:53 391KFull MSA before JPred filters in FASTA
[ ]jp_weaYJNw.hmm2015-04-17 16:53 18KHHMer2 profile of the alignment
[TXT]jp_weaYJNw.html2015-04-17 16:53 39KHTML prediction and alignment data
[ ]jp_weaYJNw.input2015-04-17 16:21 104 Raw input data for analysis
[ ]jp_weaYJNw.jalview2015-04-17 16:53 2.8KJalview annotation file for alignment
[ ]jp_weaYJNw.jnet2015-04-17 16:53 3.6KJnet secondary structure output
[TXT]jp_weaYJNw.profile2015-04-17 16:52 16KPSIBLAST profile from alignment
[ ]jp_weaYJNw.pssm2015-04-17 16:53 21KPSIBLAST PSSM for Jnet
[TXT]jp_weaYJNw.results.html2016-02-15 12:20 48KJPred results page
[TXT]jp_weaYJNw.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_weaYJNw.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_weaYJNw.seq2015-04-17 16:21 111 Sequence data file
[TXT]jp_weaYJNw.simple.html2015-04-17 16:53 1.1KBrief HTML: sequence and prediction only
[TXT]jp_weaYJNw.svg.html2015-04-17 16:53 40KJalview SVG summary of results
[ ]jp_weaYJNw.tar.gz2015-04-17 16:53 245KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.