JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 23:18 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2p8ia_.name2015-04-17 18:46 0 Job name flag file
[ ]jp_9Sdkmow.align2015-04-17 23:17 36KPSIBLAST alignment in FASTA format
[TXT]jp_9Sdkmow.als2015-04-17 23:17 2.2KAlscript command file for PS/PDF output
[ ]jp_9Sdkmow.blast.gz2015-04-17 23:17 186KCompressed PSIBLAST output file
[TXT]jp_9Sdkmow.coils.csv2015-04-17 23:17 732 COILS output in CSV format
[ ]jp_9Sdkmow.coilseq.lupas_142015-04-17 23:17 4.9KCOILS output, window length 14
[ ]jp_9Sdkmow.coilseq.lupas_212015-04-17 23:17 4.9KCOILS output, window length 21
[ ]jp_9Sdkmow.coilseq.lupas_282015-04-17 23:17 4.9KCOILS output, window length 28
[ ]jp_9Sdkmow.concise2015-04-17 23:17 73KPrediction: coiled-coil, solvent, alignment
[ ]jp_9Sdkmow.concise.blc2015-04-17 23:17 37KBLC format prediction and alignment data
[ ]jp_9Sdkmow.concise.fasta2015-04-17 23:17 37KPrediction: coiled-coil, solvent, alignment
[ ]jp_9Sdkmow.concise.pdf2015-04-17 23:18 253KPDF prediction and alignment data
[ ]jp_9Sdkmow.concise.ps2015-04-17 23:17 4.3MPrediction: coiled-coil, solvent, alignment
[ ]jp_9Sdkmow.fasta2015-04-17 20:49 131 Input query sequence in FASTA format
[ ]jp_9Sdkmow.full_MSA.fasta2015-04-17 23:17 217KFull MSA before JPred filters in FASTA
[TXT]jp_9Sdkmow.full_MSA.fasta.noGaps.html2015-04-17 23:18 116KFull MSA before JPred filters in FASTA
[TXT]jp_9Sdkmow.full_MSA.fasta.withGaps.html2015-04-17 23:18 899KFull MSA before JPred filters in FASTA
[ ]jp_9Sdkmow.hmm2015-04-17 23:17 22KHHMer2 profile of the alignment
[TXT]jp_9Sdkmow.html2015-04-17 23:17 99KHTML prediction and alignment data
[ ]jp_9Sdkmow.input2015-04-17 18:46 124 Raw input data for analysis
[ ]jp_9Sdkmow.jalview2015-04-17 23:17 3.1KJalview annotation file for alignment
[ ]jp_9Sdkmow.jnet2015-04-17 23:17 4.3KJnet secondary structure output
[TXT]jp_9Sdkmow.profile2015-04-17 23:03 19KPSIBLAST profile from alignment
[ ]jp_9Sdkmow.pssm2015-04-17 23:17 25KPSIBLAST PSSM for Jnet
[TXT]jp_9Sdkmow.results.html2016-02-15 12:20 56KJPred results page
[TXT]jp_9Sdkmow.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_9Sdkmow.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_9Sdkmow.seq2015-04-17 18:46 131 Sequence data file
[TXT]jp_9Sdkmow.simple.html2015-04-17 23:17 1.3KBrief HTML: sequence and prediction only
[TXT]jp_9Sdkmow.svg.html2015-04-17 23:18 48KJalview SVG summary of results
[ ]jp_9Sdkmow.tar.gz2015-04-17 23:18 604KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.