JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:55 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2pu9a_.name2015-04-17 18:10 0 Job name flag file
[ ]jp_4Ktw5gD.align2015-04-17 19:55 25KPSIBLAST alignment in FASTA format
[TXT]jp_4Ktw5gD.als2015-04-17 19:55 2.2KAlscript command file for PS/PDF output
[ ]jp_4Ktw5gD.blast.gz2015-04-17 19:55 66KCompressed PSIBLAST output file
[TXT]jp_4Ktw5gD.coils.csv2015-04-17 19:55 690 COILS output in CSV format
[ ]jp_4Ktw5gD.coilseq.lupas_142015-04-17 19:55 4.6KCOILS output, window length 14
[ ]jp_4Ktw5gD.coilseq.lupas_212015-04-17 19:55 4.6KCOILS output, window length 21
[ ]jp_4Ktw5gD.coilseq.lupas_282015-04-17 19:55 4.6KCOILS output, window length 28
[ ]jp_4Ktw5gD.concise2015-04-17 19:55 52KPrediction: coiled-coil, solvent, alignment
[ ]jp_4Ktw5gD.concise.blc2015-04-17 19:55 26KBLC format prediction and alignment data
[ ]jp_4Ktw5gD.concise.fasta2015-04-17 19:55 26KPrediction: coiled-coil, solvent, alignment
[ ]jp_4Ktw5gD.concise.pdf2015-04-17 19:55 155KPDF prediction and alignment data
[ ]jp_4Ktw5gD.concise.ps2015-04-17 19:55 2.9MPrediction: coiled-coil, solvent, alignment
[ ]jp_4Ktw5gD.fasta2015-04-17 19:51 124 Input query sequence in FASTA format
[ ]jp_4Ktw5gD.full_MSA.fasta2015-04-17 19:55 81KFull MSA before JPred filters in FASTA
[TXT]jp_4Ktw5gD.full_MSA.fasta.noGaps.html2015-04-17 19:55 84KFull MSA before JPred filters in FASTA
[TXT]jp_4Ktw5gD.full_MSA.fasta.withGaps.html2015-04-17 19:55 360KFull MSA before JPred filters in FASTA
[ ]jp_4Ktw5gD.hmm2015-04-17 19:55 21KHHMer2 profile of the alignment
[TXT]jp_4Ktw5gD.html2015-04-17 19:55 73KHTML prediction and alignment data
[ ]jp_4Ktw5gD.input2015-04-17 18:10 117 Raw input data for analysis
[ ]jp_4Ktw5gD.jalview2015-04-17 19:55 3.0KJalview annotation file for alignment
[ ]jp_4Ktw5gD.jnet2015-04-17 19:55 4.1KJnet secondary structure output
[TXT]jp_4Ktw5gD.profile2015-04-17 19:53 18KPSIBLAST profile from alignment
[ ]jp_4Ktw5gD.pssm2015-04-17 19:55 24KPSIBLAST PSSM for Jnet
[TXT]jp_4Ktw5gD.results.html2016-02-15 12:20 54KJPred results page
[TXT]jp_4Ktw5gD.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_4Ktw5gD.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_4Ktw5gD.seq2015-04-17 18:10 124 Sequence data file
[TXT]jp_4Ktw5gD.simple.html2015-04-17 19:55 1.2KBrief HTML: sequence and prediction only
[TXT]jp_4Ktw5gD.svg.html2015-04-17 19:55 46KJalview SVG summary of results
[ ]jp_4Ktw5gD.tar.gz2015-04-17 19:55 322KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.