JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:58 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2pyqa1.name2015-04-17 16:57 0 Job name flag file
[ ]jp_nbNuD8o.align2015-04-17 17:58 14KPSIBLAST alignment in FASTA format
[TXT]jp_nbNuD8o.als2015-04-17 17:58 2.4KAlscript command file for PS/PDF output
[ ]jp_nbNuD8o.blast.gz2015-04-17 17:58 44KCompressed PSIBLAST output file
[TXT]jp_nbNuD8o.coils.csv2015-04-17 17:58 708 COILS output in CSV format
[ ]jp_nbNuD8o.coilseq.lupas_142015-04-17 17:58 4.7KCOILS output, window length 14
[ ]jp_nbNuD8o.coilseq.lupas_212015-04-17 17:58 4.7KCOILS output, window length 21
[ ]jp_nbNuD8o.coilseq.lupas_282015-04-17 17:58 4.7KCOILS output, window length 28
[ ]jp_nbNuD8o.concise2015-04-17 17:58 32KPrediction: coiled-coil, solvent, alignment
[ ]jp_nbNuD8o.concise.blc2015-04-17 17:58 16KBLC format prediction and alignment data
[ ]jp_nbNuD8o.concise.fasta2015-04-17 17:58 15KPrediction: coiled-coil, solvent, alignment
[ ]jp_nbNuD8o.concise.pdf2015-04-17 17:58 97KPDF prediction and alignment data
[ ]jp_nbNuD8o.concise.ps2015-04-17 17:58 1.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_nbNuD8o.fasta2015-04-17 17:56 127 Input query sequence in FASTA format
[ ]jp_nbNuD8o.full_MSA.fasta2015-04-17 17:58 34KFull MSA before JPred filters in FASTA
[TXT]jp_nbNuD8o.full_MSA.fasta.noGaps.html2015-04-17 17:58 53KFull MSA before JPred filters in FASTA
[TXT]jp_nbNuD8o.full_MSA.fasta.withGaps.html2015-04-17 17:58 132KFull MSA before JPred filters in FASTA
[ ]jp_nbNuD8o.hmm2015-04-17 17:58 21KHHMer2 profile of the alignment
[TXT]jp_nbNuD8o.html2015-04-17 17:58 48KHTML prediction and alignment data
[ ]jp_nbNuD8o.input2015-04-17 16:57 120 Raw input data for analysis
[ ]jp_nbNuD8o.jalview2015-04-17 17:58 3.1KJalview annotation file for alignment
[ ]jp_nbNuD8o.jnet2015-04-17 17:58 4.2KJnet secondary structure output
[TXT]jp_nbNuD8o.profile2015-04-17 17:57 18KPSIBLAST profile from alignment
[ ]jp_nbNuD8o.pssm2015-04-17 17:58 24KPSIBLAST PSSM for Jnet
[TXT]jp_nbNuD8o.results.html2016-02-15 12:20 56KJPred results page
[TXT]jp_nbNuD8o.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_nbNuD8o.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_nbNuD8o.seq2015-04-17 16:57 127 Sequence data file
[TXT]jp_nbNuD8o.simple.html2015-04-17 17:58 1.3KBrief HTML: sequence and prediction only
[TXT]jp_nbNuD8o.svg.html2015-04-17 17:58 48KJalview SVG summary of results
[ ]jp_nbNuD8o.tar.gz2015-04-17 17:58 217KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.