JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:59 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2r31a_.name2015-04-17 17:35 0 Job name flag file
[ ]jp_D8sGfmx.align2015-04-17 18:59 152KPSIBLAST alignment in FASTA format
[TXT]jp_D8sGfmx.als2015-04-17 18:59 3.4KAlscript command file for PS/PDF output
[ ]jp_D8sGfmx.blast.gz2015-04-17 18:58 910KCompressed PSIBLAST output file
[TXT]jp_D8sGfmx.coils.csv2015-04-17 18:59 1.4KCOILS output in CSV format
[ ]jp_D8sGfmx.coilseq.lupas_142015-04-17 18:59 9.9KCOILS output, window length 14
[ ]jp_D8sGfmx.coilseq.lupas_212015-04-17 18:59 9.9KCOILS output, window length 21
[ ]jp_D8sGfmx.coilseq.lupas_282015-04-17 18:59 9.9KCOILS output, window length 28
[ ]jp_D8sGfmx.concise2015-04-17 18:59 303KPrediction: coiled-coil, solvent, alignment
[ ]jp_D8sGfmx.concise.blc2015-04-17 18:59 153KBLC format prediction and alignment data
[ ]jp_D8sGfmx.concise.fasta2015-04-17 18:59 154KPrediction: coiled-coil, solvent, alignment
[ ]jp_D8sGfmx.concise.pdf2015-04-17 18:59 1.1MPDF prediction and alignment data
[ ]jp_D8sGfmx.concise.ps2015-04-17 18:59 19MPrediction: coiled-coil, solvent, alignment
[ ]jp_D8sGfmx.fasta2015-04-17 18:52 252 Input query sequence in FASTA format
[ ]jp_D8sGfmx.full_MSA.fasta2015-04-17 18:58 1.3MFull MSA before JPred filters in FASTA
[TXT]jp_D8sGfmx.full_MSA.fasta.noGaps.html2015-04-17 18:59 317KFull MSA before JPred filters in FASTA
[TXT]jp_D8sGfmx.full_MSA.fasta.withGaps.html2015-04-17 18:59 4.4MFull MSA before JPred filters in FASTA
[ ]jp_D8sGfmx.hmm2015-04-17 18:59 44KHHMer2 profile of the alignment
[TXT]jp_D8sGfmx.html2015-04-17 18:59 292KHTML prediction and alignment data
[ ]jp_D8sGfmx.input2015-04-17 17:35 243 Raw input data for analysis
[ ]jp_D8sGfmx.jalview2015-04-17 18:59 5.6KJalview annotation file for alignment
[ ]jp_D8sGfmx.jnet2015-04-17 18:59 8.6KJnet secondary structure output
[TXT]jp_D8sGfmx.profile2015-04-17 18:57 38KPSIBLAST profile from alignment
[ ]jp_D8sGfmx.pssm2015-04-17 18:59 51KPSIBLAST PSSM for Jnet
[TXT]jp_D8sGfmx.results.html2016-02-15 12:20 103KJPred results page
[TXT]jp_D8sGfmx.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_D8sGfmx.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_D8sGfmx.seq2015-04-17 17:35 252 Sequence data file
[TXT]jp_D8sGfmx.simple.html2015-04-17 18:59 1.7KBrief HTML: sequence and prediction only
[TXT]jp_D8sGfmx.svg.html2015-04-17 18:59 95KJalview SVG summary of results
[ ]jp_D8sGfmx.tar.gz2015-04-17 18:59 2.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.