JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:04 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2r4qa1.name2015-04-17 16:58 0 Job name flag file
[ ]jp_9f2dl1U.align2015-04-17 18:04 77KPSIBLAST alignment in FASTA format
[TXT]jp_9f2dl1U.als2015-04-17 18:04 2.2KAlscript command file for PS/PDF output
[ ]jp_9f2dl1U.blast.gz2015-04-17 18:03 540KCompressed PSIBLAST output file
[TXT]jp_9f2dl1U.coils.csv2015-04-17 18:04 636 COILS output in CSV format
[ ]jp_9f2dl1U.coilseq.lupas_142015-04-17 18:04 4.2KCOILS output, window length 14
[ ]jp_9f2dl1U.coilseq.lupas_212015-04-17 18:04 4.2KCOILS output, window length 21
[ ]jp_9f2dl1U.coilseq.lupas_282015-04-17 18:04 4.2KCOILS output, window length 28
[ ]jp_9f2dl1U.concise2015-04-17 18:04 150KPrediction: coiled-coil, solvent, alignment
[ ]jp_9f2dl1U.concise.blc2015-04-17 18:04 77KBLC format prediction and alignment data
[ ]jp_9f2dl1U.concise.fasta2015-04-17 18:04 78KPrediction: coiled-coil, solvent, alignment
[ ]jp_9f2dl1U.concise.pdf2015-04-17 18:04 479KPDF prediction and alignment data
[ ]jp_9f2dl1U.concise.ps2015-04-17 18:04 8.7MPrediction: coiled-coil, solvent, alignment
[ ]jp_9f2dl1U.fasta2015-04-17 17:56 115 Input query sequence in FASTA format
[ ]jp_9f2dl1U.full_MSA.fasta2015-04-17 18:03 522KFull MSA before JPred filters in FASTA
[TXT]jp_9f2dl1U.full_MSA.fasta.noGaps.html2015-04-17 18:04 536KFull MSA before JPred filters in FASTA
[TXT]jp_9f2dl1U.full_MSA.fasta.withGaps.html2015-04-17 18:04 3.4MFull MSA before JPred filters in FASTA
[ ]jp_9f2dl1U.hmm2015-04-17 18:04 19KHHMer2 profile of the alignment
[TXT]jp_9f2dl1U.html2015-04-17 18:04 213KHTML prediction and alignment data
[ ]jp_9f2dl1U.input2015-04-17 16:58 108 Raw input data for analysis
[ ]jp_9f2dl1U.jalview2015-04-17 18:04 2.9KJalview annotation file for alignment
[ ]jp_9f2dl1U.jnet2015-04-17 18:04 3.8KJnet secondary structure output
[TXT]jp_9f2dl1U.profile2015-04-17 18:00 16KPSIBLAST profile from alignment
[ ]jp_9f2dl1U.pssm2015-04-17 18:04 22KPSIBLAST PSSM for Jnet
[TXT]jp_9f2dl1U.results.html2016-02-15 12:20 50KJPred results page
[TXT]jp_9f2dl1U.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_9f2dl1U.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_9f2dl1U.seq2015-04-17 16:58 115 Sequence data file
[TXT]jp_9f2dl1U.simple.html2015-04-17 18:04 1.2KBrief HTML: sequence and prediction only
[TXT]jp_9f2dl1U.svg.html2015-04-17 18:04 42KJalview SVG summary of results
[ ]jp_9f2dl1U.tar.gz2015-04-17 18:04 1.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.