JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:29 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2r7512.name2015-04-17 15:44 0 Job name flag file
[ ]jp_RNQHoiv.align2015-04-17 16:28 96KPSIBLAST alignment in FASTA format
[TXT]jp_RNQHoiv.als2015-04-17 16:28 2.4KAlscript command file for PS/PDF output
[ ]jp_RNQHoiv.blast.gz2015-04-17 16:28 1.4MCompressed PSIBLAST output file
[TXT]jp_RNQHoiv.coils.csv2015-04-17 16:28 786 COILS output in CSV format
[ ]jp_RNQHoiv.coilseq.lupas_142015-04-17 16:28 5.3KCOILS output, window length 14
[ ]jp_RNQHoiv.coilseq.lupas_212015-04-17 16:28 5.3KCOILS output, window length 21
[ ]jp_RNQHoiv.coilseq.lupas_282015-04-17 16:28 5.3KCOILS output, window length 28
[ ]jp_RNQHoiv.concise2015-04-17 16:28 189KPrediction: coiled-coil, solvent, alignment
[ ]jp_RNQHoiv.concise.blc2015-04-17 16:28 97KBLC format prediction and alignment data
[ ]jp_RNQHoiv.concise.fasta2015-04-17 16:28 98KPrediction: coiled-coil, solvent, alignment
[ ]jp_RNQHoiv.concise.pdf2015-04-17 16:29 614KPDF prediction and alignment data
[ ]jp_RNQHoiv.concise.ps2015-04-17 16:28 11MPrediction: coiled-coil, solvent, alignment
[ ]jp_RNQHoiv.fasta2015-04-17 15:57 140 Input query sequence in FASTA format
[ ]jp_RNQHoiv.full_MSA.fasta2015-04-17 16:28 1.9MFull MSA before JPred filters in FASTA
[TXT]jp_RNQHoiv.full_MSA.fasta.noGaps.html2015-04-17 16:29 897KFull MSA before JPred filters in FASTA
[TXT]jp_RNQHoiv.full_MSA.fasta.withGaps.html2015-04-17 16:29 9.8MFull MSA before JPred filters in FASTA
[ ]jp_RNQHoiv.hmm2015-04-17 16:28 24KHHMer2 profile of the alignment
[TXT]jp_RNQHoiv.html2015-04-17 16:28 240KHTML prediction and alignment data
[ ]jp_RNQHoiv.input2015-04-17 15:44 133 Raw input data for analysis
[ ]jp_RNQHoiv.jalview2015-04-17 16:28 3.4KJalview annotation file for alignment
[ ]jp_RNQHoiv.jnet2015-04-17 16:28 4.7KJnet secondary structure output
[TXT]jp_RNQHoiv.profile2015-04-17 16:22 20KPSIBLAST profile from alignment
[ ]jp_RNQHoiv.pssm2015-04-17 16:28 27KPSIBLAST PSSM for Jnet
[TXT]jp_RNQHoiv.results.html2016-02-15 12:20 60KJPred results page
[TXT]jp_RNQHoiv.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_RNQHoiv.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_RNQHoiv.seq2015-04-17 15:44 140 Sequence data file
[TXT]jp_RNQHoiv.simple.html2015-04-17 16:28 1.3KBrief HTML: sequence and prediction only
[TXT]jp_RNQHoiv.svg.html2015-04-17 16:29 52KJalview SVG summary of results
[ ]jp_RNQHoiv.tar.gz2015-04-17 16:29 3.1MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.