JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:06 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2v3za1.name2015-04-17 15:45 0 Job name flag file
[ ]jp_yY0WRtI.align2015-04-17 16:05 200KPSIBLAST alignment in FASTA format
[TXT]jp_yY0WRtI.als2015-04-17 16:05 3.0KAlscript command file for PS/PDF output
[ ]jp_yY0WRtI.blast.gz2015-04-17 16:04 2.1MCompressed PSIBLAST output file
[TXT]jp_yY0WRtI.coils.csv2015-04-17 16:05 1.1KCOILS output in CSV format
[ ]jp_yY0WRtI.coilseq.lupas_142015-04-17 16:05 7.4KCOILS output, window length 14
[ ]jp_yY0WRtI.coilseq.lupas_212015-04-17 16:05 7.4KCOILS output, window length 21
[ ]jp_yY0WRtI.coilseq.lupas_282015-04-17 16:05 7.4KCOILS output, window length 28
[ ]jp_yY0WRtI.concise2015-04-17 16:05 392KPrediction: coiled-coil, solvent, alignment
[ ]jp_yY0WRtI.concise.blc2015-04-17 16:05 200KBLC format prediction and alignment data
[ ]jp_yY0WRtI.concise.fasta2015-04-17 16:05 202KPrediction: coiled-coil, solvent, alignment
[ ]jp_yY0WRtI.concise.pdf2015-04-17 16:06 1.3MPDF prediction and alignment data
[ ]jp_yY0WRtI.concise.ps2015-04-17 16:06 24MPrediction: coiled-coil, solvent, alignment
[ ]jp_yY0WRtI.fasta2015-04-17 15:58 191 Input query sequence in FASTA format
[ ]jp_yY0WRtI.full_MSA.fasta2015-04-17 16:04 4.0MFull MSA before JPred filters in FASTA
[TXT]jp_yY0WRtI.full_MSA.fasta.noGaps.html2015-04-17 16:06 787KFull MSA before JPred filters in FASTA
[TXT]jp_yY0WRtI.full_MSA.fasta.withGaps.html2015-04-17 16:06 14MFull MSA before JPred filters in FASTA
[ ]jp_yY0WRtI.hmm2015-04-17 16:05 33KHHMer2 profile of the alignment
[TXT]jp_yY0WRtI.html2015-04-17 16:05 415KHTML prediction and alignment data
[ ]jp_yY0WRtI.input2015-04-17 15:45 183 Raw input data for analysis
[ ]jp_yY0WRtI.jalview2015-04-17 16:05 4.3KJalview annotation file for alignment
[ ]jp_yY0WRtI.jnet2015-04-17 16:05 6.5KJnet secondary structure output
[TXT]jp_yY0WRtI.profile2015-04-17 16:02 28KPSIBLAST profile from alignment
[ ]jp_yY0WRtI.pssm2015-04-17 16:05 38KPSIBLAST PSSM for Jnet
[TXT]jp_yY0WRtI.results.html2016-02-15 12:20 80KJPred results page
[TXT]jp_yY0WRtI.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_yY0WRtI.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_yY0WRtI.seq2015-04-17 15:45 191 Sequence data file
[TXT]jp_yY0WRtI.simple.html2015-04-17 16:05 1.5KBrief HTML: sequence and prediction only
[TXT]jp_yY0WRtI.svg.html2015-04-17 16:06 71KJalview SVG summary of results
[ ]jp_yY0WRtI.tar.gz2015-04-17 16:06 5.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.