JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:04 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2v6xa_.name2015-04-17 16:58 0 Job name flag file
[ ]jp_Ka0xPXq.align2015-04-17 18:04 65KPSIBLAST alignment in FASTA format
[TXT]jp_Ka0xPXq.als2015-04-17 18:04 1.6KAlscript command file for PS/PDF output
[ ]jp_Ka0xPXq.blast.gz2015-04-17 18:03 383KCompressed PSIBLAST output file
[TXT]jp_Ka0xPXq.coils.csv2015-04-17 18:04 522 COILS output in CSV format
[ ]jp_Ka0xPXq.coilseq.lupas_142015-04-17 18:04 3.4KCOILS output, window length 14
[ ]jp_Ka0xPXq.coilseq.lupas_212015-04-17 18:04 3.4KCOILS output, window length 21
[ ]jp_Ka0xPXq.coilseq.lupas_282015-04-17 18:04 3.4KCOILS output, window length 28
[ ]jp_Ka0xPXq.concise2015-04-17 18:04 125KPrediction: coiled-coil, solvent, alignment
[ ]jp_Ka0xPXq.concise.blc2015-04-17 18:04 65KBLC format prediction and alignment data
[ ]jp_Ka0xPXq.concise.fasta2015-04-17 18:04 66KPrediction: coiled-coil, solvent, alignment
[ ]jp_Ka0xPXq.concise.pdf2015-04-17 18:04 374KPDF prediction and alignment data
[ ]jp_Ka0xPXq.concise.ps2015-04-17 18:04 7.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_Ka0xPXq.fasta2015-04-17 17:57 96 Input query sequence in FASTA format
[ ]jp_Ka0xPXq.full_MSA.fasta2015-04-17 18:03 723KFull MSA before JPred filters in FASTA
[TXT]jp_Ka0xPXq.full_MSA.fasta.noGaps.html2015-04-17 18:04 297KFull MSA before JPred filters in FASTA
[TXT]jp_Ka0xPXq.full_MSA.fasta.withGaps.html2015-04-17 18:04 2.7MFull MSA before JPred filters in FASTA
[ ]jp_Ka0xPXq.hmm2015-04-17 18:04 15KHHMer2 profile of the alignment
[TXT]jp_Ka0xPXq.html2015-04-17 18:04 201KHTML prediction and alignment data
[ ]jp_Ka0xPXq.input2015-04-17 16:58 89 Raw input data for analysis
[ ]jp_Ka0xPXq.jalview2015-04-17 18:04 2.5KJalview annotation file for alignment
[ ]jp_Ka0xPXq.jnet2015-04-17 18:04 3.1KJnet secondary structure output
[TXT]jp_Ka0xPXq.profile2015-04-17 18:02 13KPSIBLAST profile from alignment
[ ]jp_Ka0xPXq.pssm2015-04-17 18:04 18KPSIBLAST PSSM for Jnet
[TXT]jp_Ka0xPXq.results.html2016-02-15 12:20 42KJPred results page
[TXT]jp_Ka0xPXq.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_Ka0xPXq.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_Ka0xPXq.seq2015-04-17 16:58 96 Sequence data file
[TXT]jp_Ka0xPXq.simple.html2015-04-17 18:04 1.1KBrief HTML: sequence and prediction only
[TXT]jp_Ka0xPXq.svg.html2015-04-17 18:04 34KJalview SVG summary of results
[ ]jp_Ka0xPXq.tar.gz2015-04-17 18:04 1.1MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.