JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:23 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2vbua_.name2015-04-17 18:26 0 Job name flag file
[ ]jp_XUavMsX.align2015-04-17 20:23 26KPSIBLAST alignment in FASTA format
[TXT]jp_XUavMsX.als2015-04-17 20:23 2.5KAlscript command file for PS/PDF output
[ ]jp_XUavMsX.blast.gz2015-04-17 20:23 88KCompressed PSIBLAST output file
[TXT]jp_XUavMsX.coils.csv2015-04-17 20:23 816 COILS output in CSV format
[ ]jp_XUavMsX.coilseq.lupas_142015-04-17 20:23 5.5KCOILS output, window length 14
[ ]jp_XUavMsX.coilseq.lupas_212015-04-17 20:23 5.5KCOILS output, window length 21
[ ]jp_XUavMsX.coilseq.lupas_282015-04-17 20:23 5.5KCOILS output, window length 28
[ ]jp_XUavMsX.concise2015-04-17 20:23 55KPrediction: coiled-coil, solvent, alignment
[ ]jp_XUavMsX.concise.blc2015-04-17 20:23 28KBLC format prediction and alignment data
[ ]jp_XUavMsX.concise.fasta2015-04-17 20:23 27KPrediction: coiled-coil, solvent, alignment
[ ]jp_XUavMsX.concise.pdf2015-04-17 20:23 189KPDF prediction and alignment data
[ ]jp_XUavMsX.concise.ps2015-04-17 20:23 3.2MPrediction: coiled-coil, solvent, alignment
[ ]jp_XUavMsX.fasta2015-04-17 20:19 145 Input query sequence in FASTA format
[ ]jp_XUavMsX.full_MSA.fasta2015-04-17 20:23 90KFull MSA before JPred filters in FASTA
[TXT]jp_XUavMsX.full_MSA.fasta.noGaps.html2015-04-17 20:23 62KFull MSA before JPred filters in FASTA
[TXT]jp_XUavMsX.full_MSA.fasta.withGaps.html2015-04-17 20:23 425KFull MSA before JPred filters in FASTA
[ ]jp_XUavMsX.hmm2015-04-17 20:23 25KHHMer2 profile of the alignment
[TXT]jp_XUavMsX.html2015-04-17 20:23 72KHTML prediction and alignment data
[ ]jp_XUavMsX.input2015-04-17 18:26 138 Raw input data for analysis
[ ]jp_XUavMsX.jalview2015-04-17 20:23 3.4KJalview annotation file for alignment
[ ]jp_XUavMsX.jnet2015-04-17 20:23 4.8KJnet secondary structure output
[TXT]jp_XUavMsX.profile2015-04-17 20:22 21KPSIBLAST profile from alignment
[ ]jp_XUavMsX.pssm2015-04-17 20:23 28KPSIBLAST PSSM for Jnet
[TXT]jp_XUavMsX.results.html2016-02-15 12:20 60KJPred results page
[TXT]jp_XUavMsX.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_XUavMsX.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_XUavMsX.seq2015-04-17 18:26 145 Sequence data file
[TXT]jp_XUavMsX.simple.html2015-04-17 20:23 1.3KBrief HTML: sequence and prediction only
[TXT]jp_XUavMsX.svg.html2015-04-17 20:23 52KJalview SVG summary of results
[ ]jp_XUavMsX.tar.gz2015-04-17 20:23 397KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.