JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:03 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2vxna_.name2015-04-17 17:35 0 Job name flag file
[ ]jp__OWJ5Ed.align2015-04-17 19:02 203KPSIBLAST alignment in FASTA format
[TXT]jp__OWJ5Ed.als2015-04-17 19:02 4.0KAlscript command file for PS/PDF output
[ ]jp__OWJ5Ed.blast.gz2015-04-17 19:01 4.8MCompressed PSIBLAST output file
[TXT]jp__OWJ5Ed.coils.csv2015-04-17 19:02 1.5KCOILS output in CSV format
[ ]jp__OWJ5Ed.coilseq.lupas_142015-04-17 19:02 10KCOILS output, window length 14
[ ]jp__OWJ5Ed.coilseq.lupas_212015-04-17 19:02 10KCOILS output, window length 21
[ ]jp__OWJ5Ed.coilseq.lupas_282015-04-17 19:02 10KCOILS output, window length 28
[ ]jp__OWJ5Ed.concise2015-04-17 19:02 404KPrediction: coiled-coil, solvent, alignment
[ ]jp__OWJ5Ed.concise.blc2015-04-17 19:02 204KBLC format prediction and alignment data
[ ]jp__OWJ5Ed.concise.fasta2015-04-17 19:02 206KPrediction: coiled-coil, solvent, alignment
[ ]jp__OWJ5Ed.concise.pdf2015-04-17 19:02 1.4MPDF prediction and alignment data
[ ]jp__OWJ5Ed.concise.ps2015-04-17 19:02 25MPrediction: coiled-coil, solvent, alignment
[ ]jp__OWJ5Ed.fasta2015-04-17 18:52 265 Input query sequence in FASTA format
[ ]jp__OWJ5Ed.full_MSA.fasta2015-04-17 19:01 8.2MFull MSA before JPred filters in FASTA
[TXT]jp__OWJ5Ed.full_MSA.fasta.noGaps.html2015-04-17 19:02 1.9MFull MSA before JPred filters in FASTA
[TXT]jp__OWJ5Ed.full_MSA.fasta.withGaps.html2015-04-17 19:02 29MFull MSA before JPred filters in FASTA
[ ]jp__OWJ5Ed.hmm2015-04-17 19:02 47KHHMer2 profile of the alignment
[TXT]jp__OWJ5Ed.html2015-04-17 19:02 375KHTML prediction and alignment data
[ ]jp__OWJ5Ed.input2015-04-17 17:35 256 Raw input data for analysis
[ ]jp__OWJ5Ed.jalview2015-04-17 19:02 5.8KJalview annotation file for alignment
[ ]jp__OWJ5Ed.jnet2015-04-17 19:02 9.1KJnet secondary structure output
[TXT]jp__OWJ5Ed.profile2015-04-17 19:00 40KPSIBLAST profile from alignment
[ ]jp__OWJ5Ed.pssm2015-04-17 19:02 53KPSIBLAST PSSM for Jnet
[TXT]jp__OWJ5Ed.results.html2016-02-15 12:20 110KJPred results page
[TXT]jp__OWJ5Ed.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp__OWJ5Ed.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp__OWJ5Ed.seq2015-04-17 17:35 265 Sequence data file
[TXT]jp__OWJ5Ed.simple.html2015-04-17 19:02 1.9KBrief HTML: sequence and prediction only
[TXT]jp__OWJ5Ed.svg.html2015-04-17 19:03 102KJalview SVG summary of results
[ ]jp__OWJ5Ed.tar.gz2015-04-17 19:03 9.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.