JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:16 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2w1va_.name2015-04-17 15:45 0 Job name flag file
[ ]jp_qhp85Nf.align2015-04-17 16:15 259KPSIBLAST alignment in FASTA format
[TXT]jp_qhp85Nf.als2015-04-17 16:15 4.3KAlscript command file for PS/PDF output
[ ]jp_qhp85Nf.blast.gz2015-04-17 16:11 25MCompressed PSIBLAST output file
[TXT]jp_qhp85Nf.coils.csv2015-04-17 16:15 1.6KCOILS output in CSV format
[ ]jp_qhp85Nf.coilseq.lupas_142015-04-17 16:15 12KCOILS output, window length 14
[ ]jp_qhp85Nf.coilseq.lupas_212015-04-17 16:15 12KCOILS output, window length 21
[ ]jp_qhp85Nf.coilseq.lupas_282015-04-17 16:15 12KCOILS output, window length 28
[ ]jp_qhp85Nf.concise2015-04-17 16:15 514KPrediction: coiled-coil, solvent, alignment
[ ]jp_qhp85Nf.concise.blc2015-04-17 16:15 259KBLC format prediction and alignment data
[ ]jp_qhp85Nf.concise.fasta2015-04-17 16:15 262KPrediction: coiled-coil, solvent, alignment
[ ]jp_qhp85Nf.concise.pdf2015-04-17 16:15 1.9MPDF prediction and alignment data
[ ]jp_qhp85Nf.concise.ps2015-04-17 16:15 33MPrediction: coiled-coil, solvent, alignment
[ ]jp_qhp85Nf.fasta2015-04-17 15:59 290 Input query sequence in FASTA format
[ ]jp_qhp85Nf.full_MSA.fasta2015-04-17 16:13 49MFull MSA before JPred filters in FASTA
[TXT]jp_qhp85Nf.full_MSA.fasta.noGaps.html2015-04-17 16:16 3.9MFull MSA before JPred filters in FASTA
[TXT]jp_qhp85Nf.full_MSA.fasta.withGaps.html2015-04-17 16:16 114MFull MSA before JPred filters in FASTA
[ ]jp_qhp85Nf.hmm2015-04-17 16:15 51KHHMer2 profile of the alignment
[TXT]jp_qhp85Nf.html2015-04-17 16:15 454KHTML prediction and alignment data
[ ]jp_qhp85Nf.input2015-04-17 15:45 281 Raw input data for analysis
[ ]jp_qhp85Nf.jalview2015-04-17 16:15 6.3KJalview annotation file for alignment
[ ]jp_qhp85Nf.jnet2015-04-17 16:15 10KJnet secondary structure output
[TXT]jp_qhp85Nf.profile2015-04-17 16:09 44KPSIBLAST profile from alignment
[ ]jp_qhp85Nf.pssm2015-04-17 16:15 59KPSIBLAST PSSM for Jnet
[TXT]jp_qhp85Nf.results.html2016-02-15 12:20 119KJPred results page
[TXT]jp_qhp85Nf.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_qhp85Nf.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_qhp85Nf.seq2015-04-17 15:45 290 Sequence data file
[TXT]jp_qhp85Nf.simple.html2015-04-17 16:15 1.9KBrief HTML: sequence and prediction only
[TXT]jp_qhp85Nf.svg.html2015-04-17 16:16 111KJalview SVG summary of results
[ ]jp_qhp85Nf.tar.gz2015-04-17 16:16 39MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.