JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:00 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2wn9a_.name2015-04-17 18:48 0 Job name flag file
[ ]jp_uBJ5uFM.align2015-04-17 20:59 151KPSIBLAST alignment in FASTA format
[TXT]jp_uBJ5uFM.als2015-04-17 20:59 3.1KAlscript command file for PS/PDF output
[ ]jp_uBJ5uFM.blast.gz2015-04-17 20:58 6.1MCompressed PSIBLAST output file
[TXT]jp_uBJ5uFM.coils.csv2015-04-17 20:59 1.3KCOILS output in CSV format
[ ]jp_uBJ5uFM.coilseq.lupas_142015-04-17 20:59 8.8KCOILS output, window length 14
[ ]jp_uBJ5uFM.coilseq.lupas_212015-04-17 20:59 8.8KCOILS output, window length 21
[ ]jp_uBJ5uFM.coilseq.lupas_282015-04-17 20:59 8.8KCOILS output, window length 28
[ ]jp_uBJ5uFM.concise2015-04-17 20:59 300KPrediction: coiled-coil, solvent, alignment
[ ]jp_uBJ5uFM.concise.blc2015-04-17 20:59 152KBLC format prediction and alignment data
[ ]jp_uBJ5uFM.concise.fasta2015-04-17 20:59 153KPrediction: coiled-coil, solvent, alignment
[ ]jp_uBJ5uFM.concise.pdf2015-04-17 20:59 1.1MPDF prediction and alignment data
[ ]jp_uBJ5uFM.concise.ps2015-04-17 20:59 19MPrediction: coiled-coil, solvent, alignment
[ ]jp_uBJ5uFM.fasta2015-04-17 20:52 224 Input query sequence in FASTA format
[ ]jp_uBJ5uFM.full_MSA.fasta2015-04-17 20:58 9.8MFull MSA before JPred filters in FASTA
[TXT]jp_uBJ5uFM.full_MSA.fasta.noGaps.html2015-04-17 20:59 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_uBJ5uFM.full_MSA.fasta.withGaps.html2015-04-17 20:59 27MFull MSA before JPred filters in FASTA
[ ]jp_uBJ5uFM.hmm2015-04-17 20:59 39KHHMer2 profile of the alignment
[TXT]jp_uBJ5uFM.html2015-04-17 20:59 296KHTML prediction and alignment data
[ ]jp_uBJ5uFM.input2015-04-17 18:48 216 Raw input data for analysis
[ ]jp_uBJ5uFM.jalview2015-04-17 20:59 5.0KJalview annotation file for alignment
[ ]jp_uBJ5uFM.jnet2015-04-17 20:59 7.7KJnet secondary structure output
[TXT]jp_uBJ5uFM.profile2015-04-17 20:56 34KPSIBLAST profile from alignment
[ ]jp_uBJ5uFM.pssm2015-04-17 20:59 45KPSIBLAST PSSM for Jnet
[TXT]jp_uBJ5uFM.results.html2016-02-15 12:20 91KJPred results page
[TXT]jp_uBJ5uFM.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_uBJ5uFM.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_uBJ5uFM.seq2015-04-17 18:48 224 Sequence data file
[TXT]jp_uBJ5uFM.simple.html2015-04-17 20:59 1.6KBrief HTML: sequence and prediction only
[TXT]jp_uBJ5uFM.svg.html2015-04-17 21:00 83KJalview SVG summary of results
[ ]jp_uBJ5uFM.tar.gz2015-04-17 21:00 10MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.