JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:02 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2wqka_.name2015-04-17 17:36 0 Job name flag file
[ ]jp_sx1ZIrb.align2015-04-17 19:01 209KPSIBLAST alignment in FASTA format
[TXT]jp_sx1ZIrb.als2015-04-17 19:01 4.0KAlscript command file for PS/PDF output
[ ]jp_sx1ZIrb.blast.gz2015-04-17 18:59 5.6MCompressed PSIBLAST output file
[TXT]jp_sx1ZIrb.coils.csv2015-04-17 19:01 1.5KCOILS output in CSV format
[ ]jp_sx1ZIrb.coilseq.lupas_142015-04-17 19:01 10KCOILS output, window length 14
[ ]jp_sx1ZIrb.coilseq.lupas_212015-04-17 19:01 10KCOILS output, window length 21
[ ]jp_sx1ZIrb.coilseq.lupas_282015-04-17 19:01 10KCOILS output, window length 28
[ ]jp_sx1ZIrb.concise2015-04-17 19:01 415KPrediction: coiled-coil, solvent, alignment
[ ]jp_sx1ZIrb.concise.blc2015-04-17 19:01 210KBLC format prediction and alignment data
[ ]jp_sx1ZIrb.concise.fasta2015-04-17 19:01 212KPrediction: coiled-coil, solvent, alignment
[ ]jp_sx1ZIrb.concise.pdf2015-04-17 19:02 1.5MPDF prediction and alignment data
[ ]jp_sx1ZIrb.concise.ps2015-04-17 19:01 26MPrediction: coiled-coil, solvent, alignment
[ ]jp_sx1ZIrb.fasta2015-04-17 18:53 264 Input query sequence in FASTA format
[ ]jp_sx1ZIrb.full_MSA.fasta2015-04-17 19:00 11MFull MSA before JPred filters in FASTA
[TXT]jp_sx1ZIrb.full_MSA.fasta.noGaps.html2015-04-17 19:02 1.1MFull MSA before JPred filters in FASTA
[TXT]jp_sx1ZIrb.full_MSA.fasta.withGaps.html2015-04-17 19:02 27MFull MSA before JPred filters in FASTA
[ ]jp_sx1ZIrb.hmm2015-04-17 19:01 47KHHMer2 profile of the alignment
[TXT]jp_sx1ZIrb.html2015-04-17 19:01 384KHTML prediction and alignment data
[ ]jp_sx1ZIrb.input2015-04-17 17:36 255 Raw input data for analysis
[ ]jp_sx1ZIrb.jalview2015-04-17 19:01 5.8KJalview annotation file for alignment
[ ]jp_sx1ZIrb.jnet2015-04-17 19:01 9.1KJnet secondary structure output
[TXT]jp_sx1ZIrb.profile2015-04-17 18:58 40KPSIBLAST profile from alignment
[ ]jp_sx1ZIrb.pssm2015-04-17 19:01 53KPSIBLAST PSSM for Jnet
[TXT]jp_sx1ZIrb.results.html2016-02-15 12:20 108KJPred results page
[TXT]jp_sx1ZIrb.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_sx1ZIrb.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_sx1ZIrb.seq2015-04-17 17:36 264 Sequence data file
[TXT]jp_sx1ZIrb.simple.html2015-04-17 19:01 1.8KBrief HTML: sequence and prediction only
[TXT]jp_sx1ZIrb.svg.html2015-04-17 19:02 100KJalview SVG summary of results
[ ]jp_sx1ZIrb.tar.gz2015-04-17 19:02 10MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.