A Protein Secondary Structure Prediction Server
| Name | Last modified | Size | Description | |
|---|---|---|---|---|
![[TXT]](/icons/text.gif){kind=icon} | LOG | 2015-04-17 17:02 | 4.7K | JPred server log file |
| README | 2016-02-15 12:20 | 2.1K | Results file descriptions |
| d2xhia1.name | 2015-04-17 16:23 | 0 | Job name flag file |
![[ ]](/icons/unknown.gif){kind=icon} | jp_o05UCFh.align | 2015-04-17 17:01 | 102K | PSIBLAST alignment in FASTA format |
| jp_o05UCFh.als | 2015-04-17 17:01 | 2.3K | Alscript command file for PS/PDF output |
![[ ]](/icons/compressed.gif){kind=icon} | jp_o05UCFh.blast.gz | 2015-04-17 17:01 | 633K | Compressed PSIBLAST output file |
| jp_o05UCFh.coils.csv | 2015-04-17 17:01 | 786 | COILS output in CSV format |
| jp_o05UCFh.coilseq.lupas_14 | 2015-04-17 17:01 | 5.3K | COILS output, window length 14 |
| jp_o05UCFh.coilseq.lupas_21 | 2015-04-17 17:01 | 5.3K | COILS output, window length 21 |
| jp_o05UCFh.coilseq.lupas_28 | 2015-04-17 17:01 | 5.3K | COILS output, window length 28 |
| jp_o05UCFh.concise | 2015-04-17 17:01 | 200K | Prediction: coiled-coil, solvent, alignment |
| jp_o05UCFh.concise.blc | 2015-04-17 17:01 | 103K | BLC format prediction and alignment data |
| jp_o05UCFh.concise.fasta | 2015-04-17 17:01 | 103K | Prediction: coiled-coil, solvent, alignment |
![[ ]](/icons/layout.gif){kind=icon} | jp_o05UCFh.concise.pdf | 2015-04-17 17:01 | 638K | PDF prediction and alignment data |
| jp_o05UCFh.concise.ps | 2015-04-17 17:01 | 12M | Prediction: coiled-coil, solvent, alignment |
| jp_o05UCFh.fasta | 2015-04-17 16:53 | 140 | Input query sequence in FASTA format |
| jp_o05UCFh.full_MSA.fasta | 2015-04-17 17:01 | 1.5M | Full MSA before JPred filters in FASTA |
| jp_o05UCFh.full_MSA.fasta.noGaps.html | 2015-04-17 17:02 | 232K | Full MSA before JPred filters in FASTA |
| jp_o05UCFh.full_MSA.fasta.withGaps.html | 2015-04-17 17:02 | 3.8M | Full MSA before JPred filters in FASTA |
| jp_o05UCFh.hmm | 2015-04-17 17:01 | 24K | HHMer2 profile of the alignment |
| jp_o05UCFh.html | 2015-04-17 17:01 | 251K | HTML prediction and alignment data |
| jp_o05UCFh.input | 2015-04-17 16:23 | 133 | Raw input data for analysis |
| jp_o05UCFh.jalview | 2015-04-17 17:01 | 3.3K | Jalview annotation file for alignment |
| jp_o05UCFh.jnet | 2015-04-17 17:01 | 4.7K | Jnet secondary structure output |
| jp_o05UCFh.profile | 2015-04-17 16:59 | 20K | PSIBLAST profile from alignment |
| jp_o05UCFh.pssm | 2015-04-17 17:01 | 27K | PSIBLAST PSSM for Jnet |
| jp_o05UCFh.results.html | 2016-02-15 12:20 | 60K | JPred results page |
| jp_o05UCFh.results_jalview.html | 2016-02-24 17:18 | 13K | Jalview results options |
| jp_o05UCFh.results_jalview_app.html | 2016-02-24 17:18 | 16K | HTML prediction and alignment data |
| jp_o05UCFh.seq | 2015-04-17 16:23 | 140 | Sequence data file |
| jp_o05UCFh.simple.html | 2015-04-17 17:01 | 1.3K | Brief HTML: sequence and prediction only |
![[TXT]](jp_o05UCFh.svg.html) | jp_o05UCFh.svg.html | 2015-04-17 17:02 | 52K | Jalview SVG summary of results |
| jp_o05UCFh.tar.gz | 2015-04-17 17:02 | 1.7M | Archive containing complete results |
