JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:39 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2xw6a_.name2015-04-17 17:36 0 Job name flag file
[ ]jp_bxaSPhz.align2015-04-17 19:38 119KPSIBLAST alignment in FASTA format
[TXT]jp_bxaSPhz.als2015-04-17 19:38 2.7KAlscript command file for PS/PDF output
[ ]jp_bxaSPhz.blast.gz2015-04-17 19:38 678KCompressed PSIBLAST output file
[TXT]jp_bxaSPhz.coils.csv2015-04-17 19:38 810 COILS output in CSV format
[ ]jp_bxaSPhz.coilseq.lupas_142015-04-17 19:38 5.5KCOILS output, window length 14
[ ]jp_bxaSPhz.coilseq.lupas_212015-04-17 19:38 5.5KCOILS output, window length 21
[ ]jp_bxaSPhz.coilseq.lupas_282015-04-17 19:38 5.5KCOILS output, window length 28
[ ]jp_bxaSPhz.concise2015-04-17 19:38 232KPrediction: coiled-coil, solvent, alignment
[ ]jp_bxaSPhz.concise.blc2015-04-17 19:38 119KBLC format prediction and alignment data
[ ]jp_bxaSPhz.concise.fasta2015-04-17 19:38 120KPrediction: coiled-coil, solvent, alignment
[ ]jp_bxaSPhz.concise.pdf2015-04-17 19:39 768KPDF prediction and alignment data
[ ]jp_bxaSPhz.concise.ps2015-04-17 19:38 14MPrediction: coiled-coil, solvent, alignment
[ ]jp_bxaSPhz.fasta2015-04-17 18:54 144 Input query sequence in FASTA format
[ ]jp_bxaSPhz.full_MSA.fasta2015-04-17 19:38 1.6MFull MSA before JPred filters in FASTA
[TXT]jp_bxaSPhz.full_MSA.fasta.noGaps.html2015-04-17 19:39 611KFull MSA before JPred filters in FASTA
[TXT]jp_bxaSPhz.full_MSA.fasta.withGaps.html2015-04-17 19:39 7.3MFull MSA before JPred filters in FASTA
[ ]jp_bxaSPhz.hmm2015-04-17 19:38 24KHHMer2 profile of the alignment
[TXT]jp_bxaSPhz.html2015-04-17 19:38 288KHTML prediction and alignment data
[ ]jp_bxaSPhz.input2015-04-17 17:36 137 Raw input data for analysis
[ ]jp_bxaSPhz.jalview2015-04-17 19:38 3.5KJalview annotation file for alignment
[ ]jp_bxaSPhz.jnet2015-04-17 19:38 4.8KJnet secondary structure output
[TXT]jp_bxaSPhz.profile2015-04-17 19:24 21KPSIBLAST profile from alignment
[ ]jp_bxaSPhz.pssm2015-04-17 19:38 28KPSIBLAST PSSM for Jnet
[TXT]jp_bxaSPhz.results.html2016-02-15 12:20 62KJPred results page
[TXT]jp_bxaSPhz.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_bxaSPhz.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_bxaSPhz.seq2015-04-17 17:36 144 Sequence data file
[TXT]jp_bxaSPhz.simple.html2015-04-17 19:38 1.4KBrief HTML: sequence and prediction only
[TXT]jp_bxaSPhz.svg.html2015-04-17 19:39 54KJalview SVG summary of results
[ ]jp_bxaSPhz.tar.gz2015-04-17 19:39 2.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.