JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:59 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2y5fl_.name2015-04-17 18:48 0 Job name flag file
[ ]jp_UqaHF9T.align2015-04-17 20:59 50KPSIBLAST alignment in FASTA format
[TXT]jp_UqaHF9T.als2015-04-17 20:59 1.8KAlscript command file for PS/PDF output
[ ]jp_UqaHF9T.blast.gz2015-04-17 20:58 1.5MCompressed PSIBLAST output file
[TXT]jp_UqaHF9T.coils.csv2015-04-17 20:59 354 COILS output in CSV format
[ ]jp_UqaHF9T.coilseq.lupas_142015-04-17 20:59 2.3KCOILS output, window length 14
[ ]jp_UqaHF9T.coilseq.lupas_212015-04-17 20:59 2.3KCOILS output, window length 21
[ ]jp_UqaHF9T.coilseq.lupas_282015-04-17 20:59 2.3KCOILS output, window length 28
[ ]jp_UqaHF9T.concise2015-04-17 20:59 94KPrediction: coiled-coil, solvent, alignment
[ ]jp_UqaHF9T.concise.blc2015-04-17 20:59 50KBLC format prediction and alignment data
[ ]jp_UqaHF9T.concise.fasta2015-04-17 20:59 51KPrediction: coiled-coil, solvent, alignment
[ ]jp_UqaHF9T.concise.pdf2015-04-17 20:59 236KPDF prediction and alignment data
[ ]jp_UqaHF9T.concise.ps2015-04-17 20:59 4.6MPrediction: coiled-coil, solvent, alignment
[ ]jp_UqaHF9T.fasta2015-04-17 20:52 67 Input query sequence in FASTA format
[ ]jp_UqaHF9T.full_MSA.fasta2015-04-17 20:58 5.5MFull MSA before JPred filters in FASTA
[TXT]jp_UqaHF9T.full_MSA.fasta.noGaps.html2015-04-17 20:59 2.8MFull MSA before JPred filters in FASTA
[TXT]jp_UqaHF9T.full_MSA.fasta.withGaps.html2015-04-17 20:59 25MFull MSA before JPred filters in FASTA
[ ]jp_UqaHF9T.hmm2015-04-17 20:59 10KHHMer2 profile of the alignment
[TXT]jp_UqaHF9T.html2015-04-17 20:59 187KHTML prediction and alignment data
[ ]jp_UqaHF9T.input2015-04-17 18:48 61 Raw input data for analysis
[ ]jp_UqaHF9T.jalview2015-04-17 20:59 1.9KJalview annotation file for alignment
[ ]jp_UqaHF9T.jnet2015-04-17 20:59 2.1KJnet secondary structure output
[TXT]jp_UqaHF9T.profile2015-04-17 20:56 9.1KPSIBLAST profile from alignment
[ ]jp_UqaHF9T.pssm2015-04-17 20:59 12KPSIBLAST PSSM for Jnet
[TXT]jp_UqaHF9T.results.html2016-02-15 12:20 32KJPred results page
[TXT]jp_UqaHF9T.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_UqaHF9T.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_UqaHF9T.seq2015-04-17 18:48 67 Sequence data file
[TXT]jp_UqaHF9T.simple.html2015-04-17 20:59 1.1KBrief HTML: sequence and prediction only
[TXT]jp_UqaHF9T.svg.html2015-04-17 20:59 24KJalview SVG summary of results
[ ]jp_UqaHF9T.tar.gz2015-04-17 20:59 3.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.