JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:03 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2ykza_.name2015-04-17 17:00 0 Job name flag file
[ ]jp_C7CczSo.align2015-04-17 18:02 86KPSIBLAST alignment in FASTA format
[TXT]jp_C7CczSo.als2015-04-17 18:02 1.9KAlscript command file for PS/PDF output
[ ]jp_C7CczSo.blast.gz2015-04-17 18:02 411KCompressed PSIBLAST output file
[TXT]jp_C7CczSo.coils.csv2015-04-17 18:02 786 COILS output in CSV format
[ ]jp_C7CczSo.coilseq.lupas_142015-04-17 18:02 5.3KCOILS output, window length 14
[ ]jp_C7CczSo.coilseq.lupas_212015-04-17 18:02 5.3KCOILS output, window length 21
[ ]jp_C7CczSo.coilseq.lupas_282015-04-17 18:02 5.3KCOILS output, window length 28
[ ]jp_C7CczSo.concise2015-04-17 18:02 169KPrediction: coiled-coil, solvent, alignment
[ ]jp_C7CczSo.concise.blc2015-04-17 18:02 87KBLC format prediction and alignment data
[ ]jp_C7CczSo.concise.fasta2015-04-17 18:02 87KPrediction: coiled-coil, solvent, alignment
[ ]jp_C7CczSo.concise.pdf2015-04-17 18:02 523KPDF prediction and alignment data
[ ]jp_C7CczSo.concise.ps2015-04-17 18:02 9.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_C7CczSo.fasta2015-04-17 18:00 140 Input query sequence in FASTA format
[ ]jp_C7CczSo.full_MSA.fasta2015-04-17 18:02 695KFull MSA before JPred filters in FASTA
[TXT]jp_C7CczSo.full_MSA.fasta.noGaps.html2015-04-17 18:02 201KFull MSA before JPred filters in FASTA
[TXT]jp_C7CczSo.full_MSA.fasta.withGaps.html2015-04-17 18:02 2.2MFull MSA before JPred filters in FASTA
[ ]jp_C7CczSo.hmm2015-04-17 18:02 24KHHMer2 profile of the alignment
[TXT]jp_C7CczSo.html2015-04-17 18:02 215KHTML prediction and alignment data
[ ]jp_C7CczSo.input2015-04-17 17:00 133 Raw input data for analysis
[ ]jp_C7CczSo.jalview2015-04-17 18:02 3.4KJalview annotation file for alignment
[ ]jp_C7CczSo.jnet2015-04-17 18:02 4.7KJnet secondary structure output
[TXT]jp_C7CczSo.profile2015-04-17 18:01 20KPSIBLAST profile from alignment
[ ]jp_C7CczSo.pssm2015-04-17 18:02 27KPSIBLAST PSSM for Jnet
[TXT]jp_C7CczSo.results.html2016-02-15 12:20 58KJPred results page
[TXT]jp_C7CczSo.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_C7CczSo.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_C7CczSo.seq2015-04-17 17:00 140 Sequence data file
[TXT]jp_C7CczSo.simple.html2015-04-17 18:02 1.2KBrief HTML: sequence and prediction only
[TXT]jp_C7CczSo.svg.html2015-04-17 18:03 50KJalview SVG summary of results
[ ]jp_C7CczSo.tar.gz2015-04-17 18:03 1.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.