JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:06 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2z51a1.name2015-04-17 19:25 0 Job name flag file
[ ]jp_XR4NRD4.align2015-04-17 22:05 58KPSIBLAST alignment in FASTA format
[TXT]jp_XR4NRD4.als2015-04-17 22:05 1.9KAlscript command file for PS/PDF output
[ ]jp_XR4NRD4.blast.gz2015-04-17 22:05 806KCompressed PSIBLAST output file
[TXT]jp_XR4NRD4.coils.csv2015-04-17 22:05 522 COILS output in CSV format
[ ]jp_XR4NRD4.coilseq.lupas_142015-04-17 22:05 3.4KCOILS output, window length 14
[ ]jp_XR4NRD4.coilseq.lupas_212015-04-17 22:05 3.4KCOILS output, window length 21
[ ]jp_XR4NRD4.coilseq.lupas_282015-04-17 22:05 3.4KCOILS output, window length 28
[ ]jp_XR4NRD4.concise2015-04-17 22:05 113KPrediction: coiled-coil, solvent, alignment
[ ]jp_XR4NRD4.concise.blc2015-04-17 22:05 59KBLC format prediction and alignment data
[ ]jp_XR4NRD4.concise.fasta2015-04-17 22:05 59KPrediction: coiled-coil, solvent, alignment
[ ]jp_XR4NRD4.concise.pdf2015-04-17 22:05 374KPDF prediction and alignment data
[ ]jp_XR4NRD4.concise.ps2015-04-17 22:05 6.5MPrediction: coiled-coil, solvent, alignment
[ ]jp_XR4NRD4.fasta2015-04-17 21:58 96 Input query sequence in FASTA format
[ ]jp_XR4NRD4.full_MSA.fasta2015-04-17 22:05 970KFull MSA before JPred filters in FASTA
[TXT]jp_XR4NRD4.full_MSA.fasta.noGaps.html2015-04-17 22:05 646KFull MSA before JPred filters in FASTA
[TXT]jp_XR4NRD4.full_MSA.fasta.withGaps.html2015-04-17 22:05 5.6MFull MSA before JPred filters in FASTA
[ ]jp_XR4NRD4.hmm2015-04-17 22:05 15KHHMer2 profile of the alignment
[TXT]jp_XR4NRD4.html2015-04-17 22:05 180KHTML prediction and alignment data
[ ]jp_XR4NRD4.input2015-04-17 19:25 89 Raw input data for analysis
[ ]jp_XR4NRD4.jalview2015-04-17 22:05 2.5KJalview annotation file for alignment
[ ]jp_XR4NRD4.jnet2015-04-17 22:05 3.1KJnet secondary structure output
[TXT]jp_XR4NRD4.profile2015-04-17 22:02 13KPSIBLAST profile from alignment
[ ]jp_XR4NRD4.pssm2015-04-17 22:05 18KPSIBLAST PSSM for Jnet
[TXT]jp_XR4NRD4.results.html2016-02-15 12:20 43KJPred results page
[TXT]jp_XR4NRD4.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_XR4NRD4.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_XR4NRD4.seq2015-04-17 19:25 96 Sequence data file
[TXT]jp_XR4NRD4.simple.html2015-04-17 22:05 1.1KBrief HTML: sequence and prediction only
[TXT]jp_XR4NRD4.svg.html2015-04-17 22:06 35KJalview SVG summary of results
[ ]jp_XR4NRD4.tar.gz2015-04-17 22:06 1.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.