JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:32 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d3a9sa1.name2015-04-17 18:12 0 Job name flag file
[ ]jp_D_298Ls.align2015-04-17 20:31 212KPSIBLAST alignment in FASTA format
[TXT]jp_D_298Ls.als2015-04-17 20:31 4.7KAlscript command file for PS/PDF output
[ ]jp_D_298Ls.blast.gz2015-04-17 20:31 577KCompressed PSIBLAST output file
[TXT]jp_D_298Ls.coils.csv2015-04-17 20:31 2.1KCOILS output in CSV format
[ ]jp_D_298Ls.coilseq.lupas_142015-04-17 20:31 15KCOILS output, window length 14
[ ]jp_D_298Ls.coilseq.lupas_212015-04-17 20:31 15KCOILS output, window length 21
[ ]jp_D_298Ls.coilseq.lupas_282015-04-17 20:31 15KCOILS output, window length 28
[ ]jp_D_298Ls.concise2015-04-17 20:31 427KPrediction: coiled-coil, solvent, alignment
[ ]jp_D_298Ls.concise.blc2015-04-17 20:31 214KBLC format prediction and alignment data
[ ]jp_D_298Ls.concise.fasta2015-04-17 20:31 215KPrediction: coiled-coil, solvent, alignment
[ ]jp_D_298Ls.concise.pdf2015-04-17 20:32 1.4MPDF prediction and alignment data
[ ]jp_D_298Ls.concise.ps2015-04-17 20:31 26MPrediction: coiled-coil, solvent, alignment
[ ]jp_D_298Ls.fasta2015-04-17 19:55 376 Input query sequence in FASTA format
[ ]jp_D_298Ls.full_MSA.fasta2015-04-17 20:31 1.8MFull MSA before JPred filters in FASTA
[TXT]jp_D_298Ls.full_MSA.fasta.noGaps.html2015-04-17 20:32 441KFull MSA before JPred filters in FASTA
[TXT]jp_D_298Ls.full_MSA.fasta.withGaps.html2015-04-17 20:32 7.4MFull MSA before JPred filters in FASTA
[ ]jp_D_298Ls.hmm2015-04-17 20:31 67KHHMer2 profile of the alignment
[TXT]jp_D_298Ls.html2015-04-17 20:31 355KHTML prediction and alignment data
[ ]jp_D_298Ls.input2015-04-17 18:12 366 Raw input data for analysis
[ ]jp_D_298Ls.jalview2015-04-17 20:31 8.1KJalview annotation file for alignment
[ ]jp_D_298Ls.jnet2015-04-17 20:31 13KJnet secondary structure output
[TXT]jp_D_298Ls.profile2015-04-17 20:20 57KPSIBLAST profile from alignment
[ ]jp_D_298Ls.pssm2015-04-17 20:31 77KPSIBLAST PSSM for Jnet
[TXT]jp_D_298Ls.results.html2016-02-15 12:20 152KJPred results page
[TXT]jp_D_298Ls.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_D_298Ls.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_D_298Ls.seq2015-04-17 18:12 376 Sequence data file
[TXT]jp_D_298Ls.simple.html2015-04-17 20:31 2.2KBrief HTML: sequence and prediction only
[TXT]jp_D_298Ls.svg.html2015-04-17 20:32 144KJalview SVG summary of results
[ ]jp_D_298Ls.tar.gz2015-04-17 20:32 2.8MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.