JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:34 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d3aa0a_.name2015-04-17 19:26 0 Job name flag file
[ ]jp_BJ0n1c5.align2015-04-17 22:33 83KPSIBLAST alignment in FASTA format
[TXT]jp_BJ0n1c5.als2015-04-17 22:33 4.0KAlscript command file for PS/PDF output
[ ]jp_BJ0n1c5.blast.gz2015-04-17 22:33 497KCompressed PSIBLAST output file
[TXT]jp_BJ0n1c5.coils.csv2015-04-17 22:33 1.6KCOILS output in CSV format
[ ]jp_BJ0n1c5.coilseq.lupas_142015-04-17 22:33 11KCOILS output, window length 14
[ ]jp_BJ0n1c5.coilseq.lupas_212015-04-17 22:33 11KCOILS output, window length 21
[ ]jp_BJ0n1c5.coilseq.lupas_282015-04-17 22:33 11KCOILS output, window length 28
[ ]jp_BJ0n1c5.concise2015-04-17 22:33 172KPrediction: coiled-coil, solvent, alignment
[ ]jp_BJ0n1c5.concise.blc2015-04-17 22:33 86KBLC format prediction and alignment data
[ ]jp_BJ0n1c5.concise.fasta2015-04-17 22:33 85KPrediction: coiled-coil, solvent, alignment
[ ]jp_BJ0n1c5.concise.pdf2015-04-17 22:34 578KPDF prediction and alignment data
[ ]jp_BJ0n1c5.concise.ps2015-04-17 22:33 10MPrediction: coiled-coil, solvent, alignment
[ ]jp_BJ0n1c5.fasta2015-04-17 21:59 286 Input query sequence in FASTA format
[ ]jp_BJ0n1c5.full_MSA.fasta2015-04-17 22:33 695KFull MSA before JPred filters in FASTA
[TXT]jp_BJ0n1c5.full_MSA.fasta.noGaps.html2015-04-17 22:34 208KFull MSA before JPred filters in FASTA
[TXT]jp_BJ0n1c5.full_MSA.fasta.withGaps.html2015-04-17 22:34 2.4MFull MSA before JPred filters in FASTA
[ ]jp_BJ0n1c5.hmm2015-04-17 22:33 51KHHMer2 profile of the alignment
[TXT]jp_BJ0n1c5.html2015-04-17 22:33 165KHTML prediction and alignment data
[ ]jp_BJ0n1c5.input2015-04-17 19:26 277 Raw input data for analysis
[ ]jp_BJ0n1c5.jalview2015-04-17 22:33 6.3KJalview annotation file for alignment
[ ]jp_BJ0n1c5.jnet2015-04-17 22:33 9.9KJnet secondary structure output
[TXT]jp_BJ0n1c5.profile2015-04-17 22:23 43KPSIBLAST profile from alignment
[ ]jp_BJ0n1c5.pssm2015-04-17 22:33 58KPSIBLAST PSSM for Jnet
[TXT]jp_BJ0n1c5.results.html2016-02-15 12:20 116KJPred results page
[TXT]jp_BJ0n1c5.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_BJ0n1c5.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_BJ0n1c5.seq2015-04-17 19:26 286 Sequence data file
[TXT]jp_BJ0n1c5.simple.html2015-04-17 22:33 1.8KBrief HTML: sequence and prediction only
[TXT]jp_BJ0n1c5.svg.html2015-04-17 22:34 108KJalview SVG summary of results
[ ]jp_BJ0n1c5.tar.gz2015-04-17 22:34 1.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.