JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:25 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d3ag3c_.name2015-04-17 16:24 0 Job name flag file
[ ]jp_nxfQ3UQ.align2015-04-17 17:24 206KPSIBLAST alignment in FASTA format
[TXT]jp_nxfQ3UQ.als2015-04-17 17:24 2.4KAlscript command file for PS/PDF output
[ ]jp_nxfQ3UQ.blast.gz2015-04-17 17:20 3.5MCompressed PSIBLAST output file
[TXT]jp_nxfQ3UQ.coils.csv2015-04-17 17:24 1.5KCOILS output in CSV format
[ ]jp_nxfQ3UQ.coilseq.lupas_142015-04-17 17:24 11KCOILS output, window length 14
[ ]jp_nxfQ3UQ.coilseq.lupas_212015-04-17 17:24 11KCOILS output, window length 21
[ ]jp_nxfQ3UQ.coilseq.lupas_282015-04-17 17:24 11KCOILS output, window length 28
[ ]jp_nxfQ3UQ.concise2015-04-17 17:24 410KPrediction: coiled-coil, solvent, alignment
[ ]jp_nxfQ3UQ.concise.blc2015-04-17 17:24 207KBLC format prediction and alignment data
[ ]jp_nxfQ3UQ.concise.fasta2015-04-17 17:24 209KPrediction: coiled-coil, solvent, alignment
[ ]jp_nxfQ3UQ.concise.pdf2015-04-17 17:24 1.3MPDF prediction and alignment data
[ ]jp_nxfQ3UQ.concise.ps2015-04-17 17:24 25MPrediction: coiled-coil, solvent, alignment
[ ]jp_nxfQ3UQ.fasta2015-04-17 16:54 275 Input query sequence in FASTA format
[ ]jp_nxfQ3UQ.full_MSA.fasta2015-04-17 17:23 7.9MFull MSA before JPred filters in FASTA
[TXT]jp_nxfQ3UQ.full_MSA.fasta.noGaps.html2015-04-17 17:25 1.5MFull MSA before JPred filters in FASTA
[TXT]jp_nxfQ3UQ.full_MSA.fasta.withGaps.html2015-04-17 17:25 24MFull MSA before JPred filters in FASTA
[ ]jp_nxfQ3UQ.hmm2015-04-17 17:24 49KHHMer2 profile of the alignment
[TXT]jp_nxfQ3UQ.html2015-04-17 17:24 380KHTML prediction and alignment data
[ ]jp_nxfQ3UQ.input2015-04-17 16:24 266 Raw input data for analysis
[ ]jp_nxfQ3UQ.jalview2015-04-17 17:24 6.2KJalview annotation file for alignment
[ ]jp_nxfQ3UQ.jnet2015-04-17 17:24 9.5KJnet secondary structure output
[TXT]jp_nxfQ3UQ.profile2015-04-17 17:16 41KPSIBLAST profile from alignment
[ ]jp_nxfQ3UQ.pssm2015-04-17 17:24 56KPSIBLAST PSSM for Jnet
[TXT]jp_nxfQ3UQ.results.html2016-02-15 12:20 108KJPred results page
[TXT]jp_nxfQ3UQ.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_nxfQ3UQ.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_nxfQ3UQ.seq2015-04-17 16:24 275 Sequence data file
[TXT]jp_nxfQ3UQ.simple.html2015-04-17 17:24 1.5KBrief HTML: sequence and prediction only
[TXT]jp_nxfQ3UQ.svg.html2015-04-17 17:25 100KJalview SVG summary of results
[ ]jp_nxfQ3UQ.tar.gz2015-04-17 17:25 7.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.