JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:38 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d3ag3i_.name2015-04-17 19:26 0 Job name flag file
[ ]jp_lLiTdEs.align2015-04-17 22:38 9.6KPSIBLAST alignment in FASTA format
[TXT]jp_lLiTdEs.als2015-04-17 22:38 1.5KAlscript command file for PS/PDF output
[ ]jp_lLiTdEs.blast.gz2015-04-17 22:38 29KCompressed PSIBLAST output file
[TXT]jp_lLiTdEs.coils.csv2015-04-17 22:38 468 COILS output in CSV format
[ ]jp_lLiTdEs.coilseq.lupas_142015-04-17 22:38 3.1KCOILS output, window length 14
[ ]jp_lLiTdEs.coilseq.lupas_212015-04-17 22:38 3.1KCOILS output, window length 21
[ ]jp_lLiTdEs.coilseq.lupas_282015-04-17 22:38 3.1KCOILS output, window length 28
[ ]jp_lLiTdEs.concise2015-04-17 22:38 21KPrediction: coiled-coil, solvent, alignment
[ ]jp_lLiTdEs.concise.blc2015-04-17 22:38 11KBLC format prediction and alignment data
[ ]jp_lLiTdEs.concise.fasta2015-04-17 22:38 10KPrediction: coiled-coil, solvent, alignment
[ ]jp_lLiTdEs.concise.pdf2015-04-17 22:38 62KPDF prediction and alignment data
[ ]jp_lLiTdEs.concise.ps2015-04-17 22:38 1.1MPrediction: coiled-coil, solvent, alignment
[ ]jp_lLiTdEs.fasta2015-04-17 21:59 87 Input query sequence in FASTA format
[ ]jp_lLiTdEs.full_MSA.fasta2015-04-17 22:38 20KFull MSA before JPred filters in FASTA
[TXT]jp_lLiTdEs.full_MSA.fasta.noGaps.html2015-04-17 22:38 38KFull MSA before JPred filters in FASTA
[TXT]jp_lLiTdEs.full_MSA.fasta.withGaps.html2015-04-17 22:38 68KFull MSA before JPred filters in FASTA
[ ]jp_lLiTdEs.hmm2015-04-17 22:38 14KHHMer2 profile of the alignment
[TXT]jp_lLiTdEs.html2015-04-17 22:38 39KHTML prediction and alignment data
[ ]jp_lLiTdEs.input2015-04-17 19:26 80 Raw input data for analysis
[ ]jp_lLiTdEs.jalview2015-04-17 22:38 2.3KJalview annotation file for alignment
[ ]jp_lLiTdEs.jnet2015-04-17 22:38 2.7KJnet secondary structure output
[TXT]jp_lLiTdEs.profile2015-04-17 22:27 12KPSIBLAST profile from alignment
[ ]jp_lLiTdEs.pssm2015-04-17 22:38 16KPSIBLAST PSSM for Jnet
[TXT]jp_lLiTdEs.results.html2016-02-15 12:20 38KJPred results page
[TXT]jp_lLiTdEs.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_lLiTdEs.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_lLiTdEs.seq2015-04-17 19:26 87 Sequence data file
[TXT]jp_lLiTdEs.simple.html2015-04-17 22:38 1.0KBrief HTML: sequence and prediction only
[TXT]jp_lLiTdEs.svg.html2015-04-17 22:38 30KJalview SVG summary of results
[ ]jp_lLiTdEs.tar.gz2015-04-17 22:38 142KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.