JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:11 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d3ar4a4.name2015-04-17 19:26 0 Job name flag file
[ ]jp_3bTz0Pj.align2015-04-17 22:10 219KPSIBLAST alignment in FASTA format
[TXT]jp_3bTz0Pj.als2015-04-17 22:10 3.8KAlscript command file for PS/PDF output
[ ]jp_3bTz0Pj.blast.gz2015-04-17 22:07 17MCompressed PSIBLAST output file
[TXT]jp_3bTz0Pj.coils.csv2015-04-17 22:10 1.4KCOILS output in CSV format
[ ]jp_3bTz0Pj.coilseq.lupas_142015-04-17 22:10 10KCOILS output, window length 14
[ ]jp_3bTz0Pj.coilseq.lupas_212015-04-17 22:10 10KCOILS output, window length 21
[ ]jp_3bTz0Pj.coilseq.lupas_282015-04-17 22:10 10KCOILS output, window length 28
[ ]jp_3bTz0Pj.concise2015-04-17 22:10 434KPrediction: coiled-coil, solvent, alignment
[ ]jp_3bTz0Pj.concise.blc2015-04-17 22:10 219KBLC format prediction and alignment data
[ ]jp_3bTz0Pj.concise.fasta2015-04-17 22:10 222KPrediction: coiled-coil, solvent, alignment
[ ]jp_3bTz0Pj.concise.pdf2015-04-17 22:10 1.5MPDF prediction and alignment data
[ ]jp_3bTz0Pj.concise.ps2015-04-17 22:10 27MPrediction: coiled-coil, solvent, alignment
[ ]jp_3bTz0Pj.fasta2015-04-17 22:01 255 Input query sequence in FASTA format
[ ]jp_3bTz0Pj.full_MSA.fasta2015-04-17 22:09 41MFull MSA before JPred filters in FASTA
[TXT]jp_3bTz0Pj.full_MSA.fasta.noGaps.html2015-04-17 22:11 3.6MFull MSA before JPred filters in FASTA
[TXT]jp_3bTz0Pj.full_MSA.fasta.withGaps.html2015-04-17 22:11 95MFull MSA before JPred filters in FASTA
[ ]jp_3bTz0Pj.hmm2015-04-17 22:10 45KHHMer2 profile of the alignment
[TXT]jp_3bTz0Pj.html2015-04-17 22:10 404KHTML prediction and alignment data
[ ]jp_3bTz0Pj.input2015-04-17 19:26 246 Raw input data for analysis
[ ]jp_3bTz0Pj.jalview2015-04-17 22:10 5.6KJalview annotation file for alignment
[ ]jp_3bTz0Pj.jnet2015-04-17 22:10 8.7KJnet secondary structure output
[TXT]jp_3bTz0Pj.profile2015-04-17 22:06 38KPSIBLAST profile from alignment
[ ]jp_3bTz0Pj.pssm2015-04-17 22:10 51KPSIBLAST PSSM for Jnet
[TXT]jp_3bTz0Pj.results.html2016-02-15 12:20 105KJPred results page
[TXT]jp_3bTz0Pj.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_3bTz0Pj.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_3bTz0Pj.seq2015-04-17 19:26 255 Sequence data file
[TXT]jp_3bTz0Pj.simple.html2015-04-17 22:10 1.8KBrief HTML: sequence and prediction only
[TXT]jp_3bTz0Pj.svg.html2015-04-17 22:11 97KJalview SVG summary of results
[ ]jp_3bTz0Pj.tar.gz2015-04-17 22:11 28MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.