JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:09 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d3arck_.name2015-04-17 19:27 0 Job name flag file
[ ]jp_xch5nsZ.align2015-04-17 22:09 155 PSIBLAST alignment in FASTA format
[TXT]jp_xch5nsZ.als2015-04-17 22:09 1.5KAlscript command file for PS/PDF output
[ ]jp_xch5nsZ.blast.gz2015-04-17 22:09 1.7KCompressed PSIBLAST output file
[TXT]jp_xch5nsZ.coils.csv2015-04-17 22:09 252 COILS output in CSV format
[ ]jp_xch5nsZ.coilseq.lupas_142015-04-17 22:09 1.6KCOILS output, window length 14
[ ]jp_xch5nsZ.coilseq.lupas_212015-04-17 22:09 1.6KCOILS output, window length 21
[ ]jp_xch5nsZ.coilseq.lupas_282015-04-17 22:09 1.6KCOILS output, window length 28
[ ]jp_xch5nsZ.concise2015-04-17 22:09 2.0KPrediction: coiled-coil, solvent, alignment
[ ]jp_xch5nsZ.concise.blc2015-04-17 22:09 804 BLC format prediction and alignment data
[ ]jp_xch5nsZ.concise.fasta2015-04-17 22:09 635 Prediction: coiled-coil, solvent, alignment
[ ]jp_xch5nsZ.concise.pdf2015-04-17 22:09 6.4KPDF prediction and alignment data
[ ]jp_xch5nsZ.concise.ps2015-04-17 22:09 76KPrediction: coiled-coil, solvent, alignment
[ ]jp_xch5nsZ.fasta2015-04-17 22:01 50 Input query sequence in FASTA format
[ ]jp_xch5nsZ.full_MSA.fasta2015-04-17 22:09 210 Full MSA before JPred filters in FASTA
[TXT]jp_xch5nsZ.full_MSA.fasta.noGaps.html2015-04-17 22:09 793 Full MSA before JPred filters in FASTA
[TXT]jp_xch5nsZ.full_MSA.fasta.withGaps.html2015-04-17 22:09 793 Full MSA before JPred filters in FASTA
[ ]jp_xch5nsZ.hmm2015-04-17 22:09 6.9KHHMer2 profile of the alignment
[TXT]jp_xch5nsZ.html2015-04-17 22:09 4.7KHTML prediction and alignment data
[ ]jp_xch5nsZ.input2015-04-17 19:27 44 Raw input data for analysis
[ ]jp_xch5nsZ.jalview2015-04-17 22:09 1.5KJalview annotation file for alignment
[ ]jp_xch5nsZ.jnet2015-04-17 22:09 1.4KJnet secondary structure output
[TXT]jp_xch5nsZ.profile2015-04-17 22:07 6.4KPSIBLAST profile from alignment
[ ]jp_xch5nsZ.pssm2015-04-17 22:09 7.9KPSIBLAST PSSM for Jnet
[TXT]jp_xch5nsZ.results.html2016-02-15 12:20 26KJPred results page
[TXT]jp_xch5nsZ.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_xch5nsZ.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_xch5nsZ.seq2015-04-17 19:27 50 Sequence data file
[TXT]jp_xch5nsZ.simple.html2015-04-17 22:09 1.0KBrief HTML: sequence and prediction only
[TXT]jp_xch5nsZ.svg.html2015-04-17 22:09 18KJalview SVG summary of results
[ ]jp_xch5nsZ.tar.gz2015-04-17 22:09 21KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.