JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:56 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d3awub_.name2015-04-17 18:49 0 Job name flag file
[ ]jp_gBXzDUw.align2015-04-17 20:56 7.5KPSIBLAST alignment in FASTA format
[TXT]jp_gBXzDUw.als2015-04-17 20:56 2.0KAlscript command file for PS/PDF output
[ ]jp_gBXzDUw.blast.gz2015-04-17 20:56 28KCompressed PSIBLAST output file
[TXT]jp_gBXzDUw.coils.csv2015-04-17 20:56 498 COILS output in CSV format
[ ]jp_gBXzDUw.coilseq.lupas_142015-04-17 20:56 3.3KCOILS output, window length 14
[ ]jp_gBXzDUw.coilseq.lupas_212015-04-17 20:56 3.3KCOILS output, window length 21
[ ]jp_gBXzDUw.coilseq.lupas_282015-04-17 20:56 3.3KCOILS output, window length 28
[ ]jp_gBXzDUw.concise2015-04-17 20:56 17KPrediction: coiled-coil, solvent, alignment
[ ]jp_gBXzDUw.concise.blc2015-04-17 20:56 8.6KBLC format prediction and alignment data
[ ]jp_gBXzDUw.concise.fasta2015-04-17 20:56 8.4KPrediction: coiled-coil, solvent, alignment
[ ]jp_gBXzDUw.concise.pdf2015-04-17 20:56 50KPDF prediction and alignment data
[ ]jp_gBXzDUw.concise.ps2015-04-17 20:56 920KPrediction: coiled-coil, solvent, alignment
[ ]jp_gBXzDUw.fasta2015-04-17 20:54 92 Input query sequence in FASTA format
[ ]jp_gBXzDUw.full_MSA.fasta2015-04-17 20:56 32KFull MSA before JPred filters in FASTA
[TXT]jp_gBXzDUw.full_MSA.fasta.noGaps.html2015-04-17 20:56 22KFull MSA before JPred filters in FASTA
[TXT]jp_gBXzDUw.full_MSA.fasta.withGaps.html2015-04-17 20:56 94KFull MSA before JPred filters in FASTA
[ ]jp_gBXzDUw.hmm2015-04-17 20:56 15KHHMer2 profile of the alignment
[TXT]jp_gBXzDUw.html2015-04-17 20:56 31KHTML prediction and alignment data
[ ]jp_gBXzDUw.input2015-04-17 18:49 85 Raw input data for analysis
[ ]jp_gBXzDUw.jalview2015-04-17 20:56 2.4KJalview annotation file for alignment
[ ]jp_gBXzDUw.jnet2015-04-17 20:56 2.9KJnet secondary structure output
[TXT]jp_gBXzDUw.profile2015-04-17 20:55 13KPSIBLAST profile from alignment
[ ]jp_gBXzDUw.pssm2015-04-17 20:56 17KPSIBLAST PSSM for Jnet
[TXT]jp_gBXzDUw.results.html2016-02-15 12:20 41KJPred results page
[TXT]jp_gBXzDUw.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_gBXzDUw.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_gBXzDUw.seq2015-04-17 18:49 92 Sequence data file
[TXT]jp_gBXzDUw.simple.html2015-04-17 20:56 1.2KBrief HTML: sequence and prediction only
[TXT]jp_gBXzDUw.svg.html2015-04-17 20:56 33KJalview SVG summary of results
[ ]jp_gBXzDUw.tar.gz2015-04-17 20:56 122KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.