JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 23:21 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d3bb0a_.name2015-04-17 18:46 0 Job name flag file
[ ]jp_IbOATLr.align2015-04-17 23:20 308KPSIBLAST alignment in FASTA format
[TXT]jp_IbOATLr.als2015-04-17 23:20 4.6KAlscript command file for PS/PDF output
[ ]jp_IbOATLr.blast.gz2015-04-17 23:19 1.4MCompressed PSIBLAST output file
[TXT]jp_IbOATLr.coils.csv2015-04-17 23:20 3.4KCOILS output in CSV format
[ ]jp_IbOATLr.coilseq.lupas_142015-04-17 23:20 24KCOILS output, window length 14
[ ]jp_IbOATLr.coilseq.lupas_212015-04-17 23:20 24KCOILS output, window length 21
[ ]jp_IbOATLr.coilseq.lupas_282015-04-17 23:20 24KCOILS output, window length 28
[ ]jp_IbOATLr.concise2015-04-17 23:20 627KPrediction: coiled-coil, solvent, alignment
[ ]jp_IbOATLr.concise.blc2015-04-17 23:20 313KBLC format prediction and alignment data
[ ]jp_IbOATLr.concise.fasta2015-04-17 23:20 315KPrediction: coiled-coil, solvent, alignment
[ ]jp_IbOATLr.concise.pdf2015-04-17 23:20 1.9MPDF prediction and alignment data
[ ]jp_IbOATLr.concise.ps2015-04-17 23:20 38MPrediction: coiled-coil, solvent, alignment
[ ]jp_IbOATLr.fasta2015-04-17 20:49 597 Input query sequence in FASTA format
[ ]jp_IbOATLr.full_MSA.fasta2015-04-17 23:19 3.1MFull MSA before JPred filters in FASTA
[TXT]jp_IbOATLr.full_MSA.fasta.noGaps.html2015-04-17 23:20 547KFull MSA before JPred filters in FASTA
[TXT]jp_IbOATLr.full_MSA.fasta.withGaps.html2015-04-17 23:20 9.7MFull MSA before JPred filters in FASTA
[ ]jp_IbOATLr.hmm2015-04-17 23:20 108KHHMer2 profile of the alignment
[TXT]jp_IbOATLr.html2015-04-17 23:20 453KHTML prediction and alignment data
[ ]jp_IbOATLr.input2015-04-17 18:46 583 Raw input data for analysis
[ ]jp_IbOATLr.jalview2015-04-17 23:20 12KJalview annotation file for alignment
[ ]jp_IbOATLr.jnet2015-04-17 23:20 21KJnet secondary structure output
[TXT]jp_IbOATLr.profile2015-04-17 23:08 92KPSIBLAST profile from alignment
[ ]jp_IbOATLr.pssm2015-04-17 23:20 124KPSIBLAST PSSM for Jnet
[TXT]jp_IbOATLr.results.html2016-02-15 12:20 227KJPred results page
[TXT]jp_IbOATLr.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_IbOATLr.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_IbOATLr.seq2015-04-17 18:46 597 Sequence data file
[TXT]jp_IbOATLr.simple.html2015-04-17 23:20 2.5KBrief HTML: sequence and prediction only
[TXT]jp_IbOATLr.svg.html2015-04-17 23:21 219KJalview SVG summary of results
[ ]jp_IbOATLr.tar.gz2015-04-17 23:21 4.6MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.