A Protein Secondary Structure Prediction Server
| Name | Last modified | Size | Description | |
|---|---|---|---|---|
![[TXT]](/icons/text.gif){kind=icon} | LOG | 2015-04-17 16:02 | 4.7K | JPred server log file |
| README | 2016-02-15 12:20 | 2.1K | Results file descriptions |
| d3bhpa_.name | 2015-04-17 15:47 | 0 | Job name flag file |
![[ ]](/icons/unknown.gif){kind=icon} | jp_vuSB3e_.align | 2015-04-17 16:02 | 33K | PSIBLAST alignment in FASTA format |
| jp_vuSB3e_.als | 2015-04-17 16:02 | 1.4K | Alscript command file for PS/PDF output |
![[ ]](/icons/compressed.gif){kind=icon} | jp_vuSB3e_.blast.gz | 2015-04-17 16:02 | 92K | Compressed PSIBLAST output file |
| jp_vuSB3e_.coils.csv | 2015-04-17 16:02 | 342 | COILS output in CSV format |
| jp_vuSB3e_.coilseq.lupas_14 | 2015-04-17 16:02 | 2.2K | COILS output, window length 14 |
| jp_vuSB3e_.coilseq.lupas_21 | 2015-04-17 16:02 | 2.2K | COILS output, window length 21 |
| jp_vuSB3e_.coilseq.lupas_28 | 2015-04-17 16:02 | 2.2K | COILS output, window length 28 |
| jp_vuSB3e_.concise | 2015-04-17 16:02 | 64K | Prediction: coiled-coil, solvent, alignment |
| jp_vuSB3e_.concise.blc | 2015-04-17 16:02 | 34K | BLC format prediction and alignment data |
| jp_vuSB3e_.concise.fasta | 2015-04-17 16:02 | 34K | Prediction: coiled-coil, solvent, alignment |
![[ ]](/icons/layout.gif){kind=icon} | jp_vuSB3e_.concise.pdf | 2015-04-17 16:02 | 185K | PDF prediction and alignment data |
| jp_vuSB3e_.concise.ps | 2015-04-17 16:02 | 3.4M | Prediction: coiled-coil, solvent, alignment |
| jp_vuSB3e_.fasta | 2015-04-17 16:00 | 65 | Input query sequence in FASTA format |
| jp_vuSB3e_.full_MSA.fasta | 2015-04-17 16:02 | 57K | Full MSA before JPred filters in FASTA |
| jp_vuSB3e_.full_MSA.fasta.noGaps.html | 2015-04-17 16:02 | 139K | Full MSA before JPred filters in FASTA |
| jp_vuSB3e_.full_MSA.fasta.withGaps.html | 2015-04-17 16:02 | 236K | Full MSA before JPred filters in FASTA |
| jp_vuSB3e_.hmm | 2015-04-17 16:02 | 9.8K | HHMer2 profile of the alignment |
| jp_vuSB3e_.html | 2015-04-17 16:02 | 133K | HTML prediction and alignment data |
| jp_vuSB3e_.input | 2015-04-17 15:47 | 59 | Raw input data for analysis |
| jp_vuSB3e_.jalview | 2015-04-17 16:02 | 1.9K | Jalview annotation file for alignment |
| jp_vuSB3e_.jnet | 2015-04-17 16:02 | 2.0K | Jnet secondary structure output |
| jp_vuSB3e_.profile | 2015-04-17 16:01 | 8.7K | PSIBLAST profile from alignment |
| jp_vuSB3e_.pssm | 2015-04-17 16:02 | 11K | PSIBLAST PSSM for Jnet |
| jp_vuSB3e_.results.html | 2016-02-15 12:20 | 31K | JPred results page |
| jp_vuSB3e_.results_jalview.html | 2016-02-24 17:18 | 13K | Jalview results options |
| jp_vuSB3e_.results_jalview_app.html | 2016-02-24 17:18 | 16K | HTML prediction and alignment data |
| jp_vuSB3e_.seq | 2015-04-17 15:47 | 65 | Sequence data file |
| jp_vuSB3e_.simple.html | 2015-04-17 16:02 | 1.0K | Brief HTML: sequence and prediction only |
![[TXT]](jp_vuSB3e_.svg.html) | jp_vuSB3e_.svg.html | 2015-04-17 16:02 | 23K | Jalview SVG summary of results |
| jp_vuSB3e_.tar.gz | 2015-04-17 16:02 | 374K | Archive containing complete results |
