JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:36 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d3bula1.name2015-04-17 15:47 0 Job name flag file
[ ]jp_Soz1zKy.align2015-04-17 16:35 81KPSIBLAST alignment in FASTA format
[TXT]jp_Soz1zKy.als2015-04-17 16:35 1.8KAlscript command file for PS/PDF output
[ ]jp_Soz1zKy.blast.gz2015-04-17 16:34 831KCompressed PSIBLAST output file
[TXT]jp_Soz1zKy.coils.csv2015-04-17 16:35 570 COILS output in CSV format
[ ]jp_Soz1zKy.coilseq.lupas_142015-04-17 16:35 3.8KCOILS output, window length 14
[ ]jp_Soz1zKy.coilseq.lupas_212015-04-17 16:35 3.8KCOILS output, window length 21
[ ]jp_Soz1zKy.coilseq.lupas_282015-04-17 16:35 3.8KCOILS output, window length 28
[ ]jp_Soz1zKy.concise2015-04-17 16:35 157KPrediction: coiled-coil, solvent, alignment
[ ]jp_Soz1zKy.concise.blc2015-04-17 16:35 81KBLC format prediction and alignment data
[ ]jp_Soz1zKy.concise.fasta2015-04-17 16:35 82KPrediction: coiled-coil, solvent, alignment
[ ]jp_Soz1zKy.concise.pdf2015-04-17 16:35 507KPDF prediction and alignment data
[ ]jp_Soz1zKy.concise.ps2015-04-17 16:35 9.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_Soz1zKy.fasta2015-04-17 16:00 104 Input query sequence in FASTA format
[ ]jp_Soz1zKy.full_MSA.fasta2015-04-17 16:34 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_Soz1zKy.full_MSA.fasta.noGaps.html2015-04-17 16:35 653KFull MSA before JPred filters in FASTA
[TXT]jp_Soz1zKy.full_MSA.fasta.withGaps.html2015-04-17 16:35 4.1MFull MSA before JPred filters in FASTA
[ ]jp_Soz1zKy.hmm2015-04-17 16:35 17KHHMer2 profile of the alignment
[TXT]jp_Soz1zKy.html2015-04-17 16:35 238KHTML prediction and alignment data
[ ]jp_Soz1zKy.input2015-04-17 15:47 97 Raw input data for analysis
[ ]jp_Soz1zKy.jalview2015-04-17 16:35 2.7KJalview annotation file for alignment
[ ]jp_Soz1zKy.jnet2015-04-17 16:35 3.4KJnet secondary structure output
[TXT]jp_Soz1zKy.profile2015-04-17 16:23 15KPSIBLAST profile from alignment
[ ]jp_Soz1zKy.pssm2015-04-17 16:35 19KPSIBLAST PSSM for Jnet
[TXT]jp_Soz1zKy.results.html2016-02-15 12:20 46KJPred results page
[TXT]jp_Soz1zKy.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_Soz1zKy.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_Soz1zKy.seq2015-04-17 15:47 104 Sequence data file
[TXT]jp_Soz1zKy.simple.html2015-04-17 16:35 1.1KBrief HTML: sequence and prediction only
[TXT]jp_Soz1zKy.svg.html2015-04-17 16:36 38KJalview SVG summary of results
[ ]jp_Soz1zKy.tar.gz2015-04-17 16:36 1.9MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.