JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:07 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d3buxb2.name2015-04-17 19:27 0 Job name flag file
[ ]jp_N09K_mR.align2015-04-17 22:07 12KPSIBLAST alignment in FASTA format
[TXT]jp_N09K_mR.als2015-04-17 22:07 2.0KAlscript command file for PS/PDF output
[ ]jp_N09K_mR.blast.gz2015-04-17 22:07 66KCompressed PSIBLAST output file
[TXT]jp_N09K_mR.coils.csv2015-04-17 22:07 810 COILS output in CSV format
[ ]jp_N09K_mR.coilseq.lupas_142015-04-17 22:07 5.5KCOILS output, window length 14
[ ]jp_N09K_mR.coilseq.lupas_212015-04-17 22:07 5.5KCOILS output, window length 21
[ ]jp_N09K_mR.coilseq.lupas_282015-04-17 22:07 5.5KCOILS output, window length 28
[ ]jp_N09K_mR.concise2015-04-17 22:07 28KPrediction: coiled-coil, solvent, alignment
[ ]jp_N09K_mR.concise.blc2015-04-17 22:07 14KBLC format prediction and alignment data
[ ]jp_N09K_mR.concise.fasta2015-04-17 22:07 13KPrediction: coiled-coil, solvent, alignment
[ ]jp_N09K_mR.concise.pdf2015-04-17 22:07 86KPDF prediction and alignment data
[ ]jp_N09K_mR.concise.ps2015-04-17 22:07 1.6MPrediction: coiled-coil, solvent, alignment
[ ]jp_N09K_mR.fasta2015-04-17 22:02 144 Input query sequence in FASTA format
[ ]jp_N09K_mR.full_MSA.fasta2015-04-17 22:07 101KFull MSA before JPred filters in FASTA
[TXT]jp_N09K_mR.full_MSA.fasta.noGaps.html2015-04-17 22:07 82KFull MSA before JPred filters in FASTA
[TXT]jp_N09K_mR.full_MSA.fasta.withGaps.html2015-04-17 22:07 380KFull MSA before JPred filters in FASTA
[ ]jp_N09K_mR.hmm2015-04-17 22:07 24KHHMer2 profile of the alignment
[TXT]jp_N09K_mR.html2015-04-17 22:07 41KHTML prediction and alignment data
[ ]jp_N09K_mR.input2015-04-17 19:27 137 Raw input data for analysis
[ ]jp_N09K_mR.jalview2015-04-17 22:07 3.5KJalview annotation file for alignment
[ ]jp_N09K_mR.jnet2015-04-17 22:07 4.8KJnet secondary structure output
[TXT]jp_N09K_mR.profile2015-04-17 22:05 21KPSIBLAST profile from alignment
[ ]jp_N09K_mR.pssm2015-04-17 22:07 28KPSIBLAST PSSM for Jnet
[TXT]jp_N09K_mR.results.html2016-02-15 12:20 61KJPred results page
[TXT]jp_N09K_mR.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_N09K_mR.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_N09K_mR.seq2015-04-17 19:27 144 Sequence data file
[TXT]jp_N09K_mR.simple.html2015-04-17 22:07 1.2KBrief HTML: sequence and prediction only
[TXT]jp_N09K_mR.svg.html2015-04-17 22:07 53KJalview SVG summary of results
[ ]jp_N09K_mR.tar.gz2015-04-17 22:07 229KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.