JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[ ]jp_8YP21cS.input2015-04-17 17:39 529 Raw input data for analysis
[ ]jp_8YP21cS.seq2015-04-17 17:39 542 Sequence data file
[TXT]d3bvua2.name2015-04-17 17:39 0 Job name flag file
[ ]jp_8YP21cS.fasta2015-04-17 19:00 542 Input query sequence in FASTA format
[TXT]jp_8YP21cS.profile2015-04-17 19:06 83KPSIBLAST profile from alignment
[ ]jp_8YP21cS.blast.gz2015-04-17 19:07 3.8MCompressed PSIBLAST output file
[ ]jp_8YP21cS.full_MSA.fasta2015-04-17 19:08 7.2MFull MSA before JPred filters in FASTA
[ ]jp_8YP21cS.align2015-04-17 19:09 483KPSIBLAST alignment in FASTA format
[ ]jp_8YP21cS.pssm2015-04-17 19:09 112KPSIBLAST PSSM for Jnet
[ ]jp_8YP21cS.hmm2015-04-17 19:09 98KHHMer2 profile of the alignment
[ ]jp_8YP21cS.jnet2015-04-17 19:09 19KJnet secondary structure output
[ ]jp_8YP21cS.coilseq.lupas_212015-04-17 19:09 22KCOILS output, window length 21
[ ]jp_8YP21cS.coilseq.lupas_142015-04-17 19:09 22KCOILS output, window length 14
[ ]jp_8YP21cS.coilseq.lupas_282015-04-17 19:09 22KCOILS output, window length 28
[TXT]jp_8YP21cS.coils.csv2015-04-17 19:09 3.1KCOILS output in CSV format
[ ]jp_8YP21cS.concise2015-04-17 19:09 965KPrediction: coiled-coil, solvent, alignment
[TXT]jp_8YP21cS.html2015-04-17 19:09 691KHTML prediction and alignment data
[TXT]jp_8YP21cS.simple.html2015-04-17 19:09 2.8KBrief HTML: sequence and prediction only
[ ]jp_8YP21cS.jalview2015-04-17 19:09 11KJalview annotation file for alignment
[ ]jp_8YP21cS.concise.fasta2015-04-17 19:09 488KPrediction: coiled-coil, solvent, alignment
[ ]jp_8YP21cS.concise.blc2015-04-17 19:09 483KBLC format prediction and alignment data
[TXT]jp_8YP21cS.als2015-04-17 19:09 6.9KAlscript command file for PS/PDF output
[ ]jp_8YP21cS.concise.ps2015-04-17 19:09 61MPrediction: coiled-coil, solvent, alignment
[ ]jp_8YP21cS.concise.pdf2015-04-17 19:10 3.3MPDF prediction and alignment data
[TXT]jp_8YP21cS.full_MSA.fasta.withGaps.html2015-04-17 19:10 22MFull MSA before JPred filters in FASTA
[TXT]jp_8YP21cS.full_MSA.fasta.noGaps.html2015-04-17 19:10 868KFull MSA before JPred filters in FASTA
[TXT]jp_8YP21cS.svg.html2015-04-17 19:10 203KJalview SVG summary of results
[TXT]LOG2015-04-17 19:11 4.7KJPred server log file
[ ]jp_8YP21cS.tar.gz2015-04-17 19:11 9.8MArchive containing complete results
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]jp_8YP21cS.results.html2016-02-15 12:20 211KJPred results page
[TXT]jp_8YP21cS.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_8YP21cS.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.