JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

Home
REST API
About
F.A.Q.
Help & Tutorials
Monitoring
Contact
Publications
 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:05 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3ct6a1.name2015-04-17 17:01 0 Job name flag file
[ ]jp_etW3xp3.align2015-04-17 18:04 77KPSIBLAST alignment in FASTA format
[TXT]jp_etW3xp3.als2015-04-17 18:04 2.5KAlscript command file for PS/PDF output
[ ]jp_etW3xp3.blast.gz2015-04-17 18:04 286KCompressed PSIBLAST output file
[TXT]jp_etW3xp3.coils.csv2015-04-17 18:04 768 COILS output in CSV format
[ ]jp_etW3xp3.coilseq.lupas_142015-04-17 18:04 5.2KCOILS output, window length 14
[ ]jp_etW3xp3.coilseq.lupas_212015-04-17 18:04 5.2KCOILS output, window length 21
[ ]jp_etW3xp3.coilseq.lupas_282015-04-17 18:04 5.2KCOILS output, window length 28
[ ]jp_etW3xp3.concise2015-04-17 18:04 152KPrediction: coiled-coil, solvent, alignment
[ ]jp_etW3xp3.concise.blc2015-04-17 18:04 78KBLC format prediction and alignment data
[ ]jp_etW3xp3.concise.fasta2015-04-17 18:04 78KPrediction: coiled-coil, solvent, alignment
[ ]jp_etW3xp3.concise.pdf2015-04-17 18:05 514KPDF prediction and alignment data
[ ]jp_etW3xp3.concise.ps2015-04-17 18:04 9.1MPrediction: coiled-coil, solvent, alignment
[ ]jp_etW3xp3.fasta2015-04-17 18:01 137 Input query sequence in FASTA format
[ ]jp_etW3xp3.full_MSA.fasta2015-04-17 18:04 377KFull MSA before JPred filters in FASTA
[TXT]jp_etW3xp3.full_MSA.fasta.noGaps.html2015-04-17 18:05 201KFull MSA before JPred filters in FASTA
[TXT]jp_etW3xp3.full_MSA.fasta.withGaps.html2015-04-17 18:05 1.8MFull MSA before JPred filters in FASTA
[ ]jp_etW3xp3.hmm2015-04-17 18:04 23KHHMer2 profile of the alignment
[TXT]jp_etW3xp3.html2015-04-17 18:04 198KHTML prediction and alignment data
[ ]jp_etW3xp3.input2015-04-17 17:01 130 Raw input data for analysis
[ ]jp_etW3xp3.jalview2015-04-17 18:04 3.3KJalview annotation file for alignment
[ ]jp_etW3xp3.jnet2015-04-17 18:04 4.6KJnet secondary structure output
[TXT]jp_etW3xp3.profile2015-04-17 18:03 20KPSIBLAST profile from alignment
[ ]jp_etW3xp3.pssm2015-04-17 18:04 26KPSIBLAST PSSM for Jnet
[TXT]jp_etW3xp3.results.html2016-02-15 12:21 59KJPred results page
[TXT]jp_etW3xp3.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_etW3xp3.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_etW3xp3.seq2015-04-17 17:01 137 Sequence data file
[TXT]jp_etW3xp3.simple.html2015-04-17 18:04 1.3KBrief HTML: sequence and prediction only
[TXT]jp_etW3xp3.svg.html2015-04-17 18:05 51KJalview SVG summary of results
[ ]jp_etW3xp3.tar.gz2015-04-17 18:05 1.1MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.