JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

Home
REST API
About
F.A.Q.
Help & Tutorials
Monitoring
Contact
Publications
 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:59 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3dbya1.name2015-04-17 16:25 0 Job name flag file
[ ]jp_r7aG3J3.align2015-04-17 16:59 52KPSIBLAST alignment in FASTA format
[TXT]jp_r7aG3J3.als2015-04-17 16:59 1.9KAlscript command file for PS/PDF output
[ ]jp_r7aG3J3.blast.gz2015-04-17 16:59 214KCompressed PSIBLAST output file
[TXT]jp_r7aG3J3.coils.csv2015-04-17 16:59 756 COILS output in CSV format
[ ]jp_r7aG3J3.coilseq.lupas_142015-04-17 16:59 5.1KCOILS output, window length 14
[ ]jp_r7aG3J3.coilseq.lupas_212015-04-17 16:59 5.1KCOILS output, window length 21
[ ]jp_r7aG3J3.coilseq.lupas_282015-04-17 16:59 5.1KCOILS output, window length 28
[ ]jp_r7aG3J3.concise2015-04-17 16:59 104KPrediction: coiled-coil, solvent, alignment
[ ]jp_r7aG3J3.concise.blc2015-04-17 16:59 53KBLC format prediction and alignment data
[ ]jp_r7aG3J3.concise.fasta2015-04-17 16:59 53KPrediction: coiled-coil, solvent, alignment
[ ]jp_r7aG3J3.concise.pdf2015-04-17 16:59 324KPDF prediction and alignment data
[ ]jp_r7aG3J3.concise.ps2015-04-17 16:59 6.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_r7aG3J3.fasta2015-04-17 16:56 135 Input query sequence in FASTA format
[ ]jp_r7aG3J3.full_MSA.fasta2015-04-17 16:59 546KFull MSA before JPred filters in FASTA
[TXT]jp_r7aG3J3.full_MSA.fasta.noGaps.html2015-04-17 16:59 135KFull MSA before JPred filters in FASTA
[TXT]jp_r7aG3J3.full_MSA.fasta.withGaps.html2015-04-17 16:59 1.3MFull MSA before JPred filters in FASTA
[ ]jp_r7aG3J3.hmm2015-04-17 16:59 23KHHMer2 profile of the alignment
[TXT]jp_r7aG3J3.html2015-04-17 16:59 139KHTML prediction and alignment data
[ ]jp_r7aG3J3.input2015-04-17 16:25 128 Raw input data for analysis
[ ]jp_r7aG3J3.jalview2015-04-17 16:59 3.3KJalview annotation file for alignment
[ ]jp_r7aG3J3.jnet2015-04-17 16:59 4.5KJnet secondary structure output
[TXT]jp_r7aG3J3.profile2015-04-17 16:58 20KPSIBLAST profile from alignment
[ ]jp_r7aG3J3.pssm2015-04-17 16:59 26KPSIBLAST PSSM for Jnet
[TXT]jp_r7aG3J3.results.html2016-02-15 12:21 57KJPred results page
[TXT]jp_r7aG3J3.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_r7aG3J3.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_r7aG3J3.seq2015-04-17 16:25 135 Sequence data file
[TXT]jp_r7aG3J3.simple.html2015-04-17 16:59 1.2KBrief HTML: sequence and prediction only
[TXT]jp_r7aG3J3.svg.html2015-04-17 16:59 49KJalview SVG summary of results
[ ]jp_r7aG3J3.tar.gz2015-04-17 16:59 746KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.