JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:59 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3dxra_.name2015-04-17 16:25 0 Job name flag file
[ ]jp_xqAijD1.align2015-04-17 16:59 64KPSIBLAST alignment in FASTA format
[TXT]jp_xqAijD1.als2015-04-17 16:59 1.4KAlscript command file for PS/PDF output
[ ]jp_xqAijD1.blast.gz2015-04-17 16:58 192KCompressed PSIBLAST output file
[TXT]jp_xqAijD1.coils.csv2015-04-17 16:59 444 COILS output in CSV format
[ ]jp_xqAijD1.coilseq.lupas_142015-04-17 16:59 2.9KCOILS output, window length 14
[ ]jp_xqAijD1.coilseq.lupas_212015-04-17 16:59 2.9KCOILS output, window length 21
[ ]jp_xqAijD1.coilseq.lupas_282015-04-17 16:59 2.9KCOILS output, window length 28
[ ]jp_xqAijD1.concise2015-04-17 16:59 124KPrediction: coiled-coil, solvent, alignment
[ ]jp_xqAijD1.concise.blc2015-04-17 16:59 65KBLC format prediction and alignment data
[ ]jp_xqAijD1.concise.fasta2015-04-17 16:59 65KPrediction: coiled-coil, solvent, alignment
[ ]jp_xqAijD1.concise.pdf2015-04-17 16:59 357KPDF prediction and alignment data
[ ]jp_xqAijD1.concise.ps2015-04-17 16:59 6.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_xqAijD1.fasta2015-04-17 16:56 82 Input query sequence in FASTA format
[ ]jp_xqAijD1.full_MSA.fasta2015-04-17 16:58 401KFull MSA before JPred filters in FASTA
[TXT]jp_xqAijD1.full_MSA.fasta.noGaps.html2015-04-17 16:59 273KFull MSA before JPred filters in FASTA
[TXT]jp_xqAijD1.full_MSA.fasta.withGaps.html2015-04-17 16:59 1.9MFull MSA before JPred filters in FASTA
[ ]jp_xqAijD1.hmm2015-04-17 16:59 13KHHMer2 profile of the alignment
[TXT]jp_xqAijD1.html2015-04-17 16:59 219KHTML prediction and alignment data
[ ]jp_xqAijD1.input2015-04-17 16:25 76 Raw input data for analysis
[ ]jp_xqAijD1.jalview2015-04-17 16:59 2.2KJalview annotation file for alignment
[ ]jp_xqAijD1.jnet2015-04-17 16:59 2.6KJnet secondary structure output
[TXT]jp_xqAijD1.profile2015-04-17 16:57 11KPSIBLAST profile from alignment
[ ]jp_xqAijD1.pssm2015-04-17 16:59 15KPSIBLAST PSSM for Jnet
[TXT]jp_xqAijD1.results.html2016-02-15 12:21 36KJPred results page
[TXT]jp_xqAijD1.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_xqAijD1.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_xqAijD1.seq2015-04-17 16:25 82 Sequence data file
[TXT]jp_xqAijD1.simple.html2015-04-17 16:59 1.0KBrief HTML: sequence and prediction only
[TXT]jp_xqAijD1.svg.html2015-04-17 16:59 28KJalview SVG summary of results
[ ]jp_xqAijD1.tar.gz2015-04-17 16:59 834KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.