JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:10 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3eera_.name2015-04-17 18:14 0 Job name flag file
[ ]jp_6odypAX.align2015-04-17 20:09 163KPSIBLAST alignment in FASTA format
[TXT]jp_6odypAX.als2015-04-17 20:09 2.5KAlscript command file for PS/PDF output
[ ]jp_6odypAX.blast.gz2015-04-17 20:08 2.6MCompressed PSIBLAST output file
[TXT]jp_6odypAX.coils.csv2015-04-17 20:09 870 COILS output in CSV format
[ ]jp_6odypAX.coilseq.lupas_142015-04-17 20:09 5.9KCOILS output, window length 14
[ ]jp_6odypAX.coilseq.lupas_212015-04-17 20:09 5.9KCOILS output, window length 21
[ ]jp_6odypAX.coilseq.lupas_282015-04-17 20:09 5.9KCOILS output, window length 28
[ ]jp_6odypAX.concise2015-04-17 20:09 318KPrediction: coiled-coil, solvent, alignment
[ ]jp_6odypAX.concise.blc2015-04-17 20:09 164KBLC format prediction and alignment data
[ ]jp_6odypAX.concise.fasta2015-04-17 20:09 165KPrediction: coiled-coil, solvent, alignment
[ ]jp_6odypAX.concise.pdf2015-04-17 20:10 1.1MPDF prediction and alignment data
[ ]jp_6odypAX.concise.ps2015-04-17 20:09 19MPrediction: coiled-coil, solvent, alignment
[ ]jp_6odypAX.fasta2015-04-17 20:01 154 Input query sequence in FASTA format
[ ]jp_6odypAX.full_MSA.fasta2015-04-17 20:09 6.1MFull MSA before JPred filters in FASTA
[TXT]jp_6odypAX.full_MSA.fasta.noGaps.html2015-04-17 20:10 1.5MFull MSA before JPred filters in FASTA
[TXT]jp_6odypAX.full_MSA.fasta.withGaps.html2015-04-17 20:10 24MFull MSA before JPred filters in FASTA
[ ]jp_6odypAX.hmm2015-04-17 20:09 26KHHMer2 profile of the alignment
[TXT]jp_6odypAX.html2015-04-17 20:09 378KHTML prediction and alignment data
[ ]jp_6odypAX.input2015-04-17 18:14 147 Raw input data for analysis
[ ]jp_6odypAX.jalview2015-04-17 20:09 3.7KJalview annotation file for alignment
[ ]jp_6odypAX.jnet2015-04-17 20:09 5.2KJnet secondary structure output
[TXT]jp_6odypAX.profile2015-04-17 20:05 23KPSIBLAST profile from alignment
[ ]jp_6odypAX.pssm2015-04-17 20:09 30KPSIBLAST PSSM for Jnet
[TXT]jp_6odypAX.results.html2016-02-15 12:21 64KJPred results page
[TXT]jp_6odypAX.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_6odypAX.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_6odypAX.seq2015-04-17 18:14 154 Sequence data file
[TXT]jp_6odypAX.simple.html2015-04-17 20:09 1.3KBrief HTML: sequence and prediction only
[TXT]jp_6odypAX.svg.html2015-04-17 20:10 56KJalview SVG summary of results
[ ]jp_6odypAX.tar.gz2015-04-17 20:10 6.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.