JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:55 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3fsta_.name2015-04-17 18:52 0 Job name flag file
[ ]jp_47ZDymW.align2015-04-17 21:54 289KPSIBLAST alignment in FASTA format
[TXT]jp_47ZDymW.als2015-04-17 21:54 4.2KAlscript command file for PS/PDF output
[ ]jp_47ZDymW.blast.gz2015-04-17 21:52 5.2MCompressed PSIBLAST output file
[TXT]jp_47ZDymW.coils.csv2015-04-17 21:54 1.7KCOILS output in CSV format
[ ]jp_47ZDymW.coilseq.lupas_142015-04-17 21:54 12KCOILS output, window length 14
[ ]jp_47ZDymW.coilseq.lupas_212015-04-17 21:54 12KCOILS output, window length 21
[ ]jp_47ZDymW.coilseq.lupas_282015-04-17 21:54 12KCOILS output, window length 28
[ ]jp_47ZDymW.concise2015-04-17 21:54 573KPrediction: coiled-coil, solvent, alignment
[ ]jp_47ZDymW.concise.blc2015-04-17 21:54 289KBLC format prediction and alignment data
[ ]jp_47ZDymW.concise.fasta2015-04-17 21:54 292KPrediction: coiled-coil, solvent, alignment
[ ]jp_47ZDymW.concise.pdf2015-04-17 21:54 2.0MPDF prediction and alignment data
[ ]jp_47ZDymW.concise.ps2015-04-17 21:54 36MPrediction: coiled-coil, solvent, alignment
[ ]jp_47ZDymW.fasta2015-04-17 20:58 302 Input query sequence in FASTA format
[ ]jp_47ZDymW.full_MSA.fasta2015-04-17 21:53 10MFull MSA before JPred filters in FASTA
[TXT]jp_47ZDymW.full_MSA.fasta.noGaps.html2015-04-17 21:55 1.5MFull MSA before JPred filters in FASTA
[TXT]jp_47ZDymW.full_MSA.fasta.withGaps.html2015-04-17 21:55 34MFull MSA before JPred filters in FASTA
[ ]jp_47ZDymW.hmm2015-04-17 21:54 54KHHMer2 profile of the alignment
[TXT]jp_47ZDymW.html2015-04-17 21:54 502KHTML prediction and alignment data
[ ]jp_47ZDymW.input2015-04-17 18:52 293 Raw input data for analysis
[ ]jp_47ZDymW.jalview2015-04-17 21:54 6.6KJalview annotation file for alignment
[ ]jp_47ZDymW.jnet2015-04-17 21:54 10KJnet secondary structure output
[TXT]jp_47ZDymW.profile2015-04-17 21:41 46KPSIBLAST profile from alignment
[ ]jp_47ZDymW.pssm2015-04-17 21:54 61KPSIBLAST PSSM for Jnet
[TXT]jp_47ZDymW.results.html2016-02-15 12:21 124KJPred results page
[TXT]jp_47ZDymW.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_47ZDymW.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_47ZDymW.seq2015-04-17 18:52 302 Sequence data file
[TXT]jp_47ZDymW.simple.html2015-04-17 21:54 1.9KBrief HTML: sequence and prediction only
[TXT]jp_47ZDymW.svg.html2015-04-17 21:55 116KJalview SVG summary of results
[ ]jp_47ZDymW.tar.gz2015-04-17 21:55 11MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.