JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:38 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3hlxa_.name2015-04-17 19:10 0 Job name flag file
[ ]jp_azu_1dz.align2015-04-17 21:37 213KPSIBLAST alignment in FASTA format
[TXT]jp_azu_1dz.als2015-04-17 21:37 2.9KAlscript command file for PS/PDF output
[ ]jp_azu_1dz.blast.gz2015-04-17 21:37 638KCompressed PSIBLAST output file
[TXT]jp_azu_1dz.coils.csv2015-04-17 21:37 1.5KCOILS output in CSV format
[ ]jp_azu_1dz.coilseq.lupas_142015-04-17 21:37 11KCOILS output, window length 14
[ ]jp_azu_1dz.coilseq.lupas_212015-04-17 21:37 11KCOILS output, window length 21
[ ]jp_azu_1dz.coilseq.lupas_282015-04-17 21:37 11KCOILS output, window length 28
[ ]jp_azu_1dz.concise2015-04-17 21:37 423KPrediction: coiled-coil, solvent, alignment
[ ]jp_azu_1dz.concise.blc2015-04-17 21:37 214KBLC format prediction and alignment data
[ ]jp_azu_1dz.concise.fasta2015-04-17 21:37 215KPrediction: coiled-coil, solvent, alignment
[ ]jp_azu_1dz.concise.pdf2015-04-17 21:38 1.4MPDF prediction and alignment data
[ ]jp_azu_1dz.concise.ps2015-04-17 21:37 26MPrediction: coiled-coil, solvent, alignment
[ ]jp_azu_1dz.fasta2015-04-17 21:34 270 Input query sequence in FASTA format
[ ]jp_azu_1dz.full_MSA.fasta2015-04-17 21:37 1.7MFull MSA before JPred filters in FASTA
[TXT]jp_azu_1dz.full_MSA.fasta.noGaps.html2015-04-17 21:38 459KFull MSA before JPred filters in FASTA
[TXT]jp_azu_1dz.full_MSA.fasta.withGaps.html2015-04-17 21:38 7.9MFull MSA before JPred filters in FASTA
[ ]jp_azu_1dz.hmm2015-04-17 21:37 48KHHMer2 profile of the alignment
[TXT]jp_azu_1dz.html2015-04-17 21:37 390KHTML prediction and alignment data
[ ]jp_azu_1dz.input2015-04-17 19:10 261 Raw input data for analysis
[ ]jp_azu_1dz.jalview2015-04-17 21:37 6.0KJalview annotation file for alignment
[ ]jp_azu_1dz.jnet2015-04-17 21:37 9.3KJnet secondary structure output
[TXT]jp_azu_1dz.profile2015-04-17 21:36 41KPSIBLAST profile from alignment
[ ]jp_azu_1dz.pssm2015-04-17 21:37 55KPSIBLAST PSSM for Jnet
[TXT]jp_azu_1dz.results.html2016-02-15 12:21 109KJPred results page
[TXT]jp_azu_1dz.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_azu_1dz.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_azu_1dz.seq2015-04-17 19:10 270 Sequence data file
[TXT]jp_azu_1dz.simple.html2015-04-17 21:37 1.6KBrief HTML: sequence and prediction only
[TXT]jp_azu_1dz.svg.html2015-04-17 21:38 100KJalview SVG summary of results
[ ]jp_azu_1dz.tar.gz2015-04-17 21:38 3.0MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.