JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:18 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3k2za2.name2015-04-17 18:52 0 Job name flag file
[ ]jp_S3DIuym.align2015-04-17 22:17 116KPSIBLAST alignment in FASTA format
[TXT]jp_S3DIuym.als2015-04-17 22:17 2.5KAlscript command file for PS/PDF output
[ ]jp_S3DIuym.blast.gz2015-04-17 22:16 4.0MCompressed PSIBLAST output file
[TXT]jp_S3DIuym.coils.csv2015-04-17 22:17 786 COILS output in CSV format
[ ]jp_S3DIuym.coilseq.lupas_142015-04-17 22:17 5.3KCOILS output, window length 14
[ ]jp_S3DIuym.coilseq.lupas_212015-04-17 22:17 5.3KCOILS output, window length 21
[ ]jp_S3DIuym.coilseq.lupas_282015-04-17 22:17 5.3KCOILS output, window length 28
[ ]jp_S3DIuym.concise2015-04-17 22:17 227KPrediction: coiled-coil, solvent, alignment
[ ]jp_S3DIuym.concise.blc2015-04-17 22:17 117KBLC format prediction and alignment data
[ ]jp_S3DIuym.concise.fasta2015-04-17 22:17 118KPrediction: coiled-coil, solvent, alignment
[ ]jp_S3DIuym.concise.pdf2015-04-17 22:18 817KPDF prediction and alignment data
[ ]jp_S3DIuym.concise.ps2015-04-17 22:17 14MPrediction: coiled-coil, solvent, alignment
[ ]jp_S3DIuym.fasta2015-04-17 20:58 140 Input query sequence in FASTA format
[ ]jp_S3DIuym.full_MSA.fasta2015-04-17 22:17 6.0MFull MSA before JPred filters in FASTA
[TXT]jp_S3DIuym.full_MSA.fasta.noGaps.html2015-04-17 22:18 1.5MFull MSA before JPred filters in FASTA
[TXT]jp_S3DIuym.full_MSA.fasta.withGaps.html2015-04-17 22:18 24MFull MSA before JPred filters in FASTA
[ ]jp_S3DIuym.hmm2015-04-17 22:17 24KHHMer2 profile of the alignment
[TXT]jp_S3DIuym.html2015-04-17 22:17 284KHTML prediction and alignment data
[ ]jp_S3DIuym.input2015-04-17 18:52 133 Raw input data for analysis
[ ]jp_S3DIuym.jalview2015-04-17 22:17 3.3KJalview annotation file for alignment
[ ]jp_S3DIuym.jnet2015-04-17 22:17 4.7KJnet secondary structure output
[TXT]jp_S3DIuym.profile2015-04-17 21:58 20KPSIBLAST profile from alignment
[ ]jp_S3DIuym.pssm2015-04-17 22:17 27KPSIBLAST PSSM for Jnet
[TXT]jp_S3DIuym.results.html2016-02-15 12:21 58KJPred results page
[TXT]jp_S3DIuym.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_S3DIuym.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_S3DIuym.seq2015-04-17 18:52 140 Sequence data file
[TXT]jp_S3DIuym.simple.html2015-04-17 22:17 1.3KBrief HTML: sequence and prediction only
[TXT]jp_S3DIuym.svg.html2015-04-17 22:18 50KJalview SVG summary of results
[ ]jp_S3DIuym.tar.gz2015-04-17 22:18 7.4MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.