JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:05 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3k34a_.name2015-04-17 18:53 0 Job name flag file
[ ]jp_mO_pdTH.align2015-04-17 21:04 243KPSIBLAST alignment in FASTA format
[TXT]jp_mO_pdTH.als2015-04-17 21:04 3.8KAlscript command file for PS/PDF output
[ ]jp_mO_pdTH.blast.gz2015-04-17 21:03 7.3MCompressed PSIBLAST output file
[TXT]jp_mO_pdTH.coils.csv2015-04-17 21:04 1.5KCOILS output in CSV format
[ ]jp_mO_pdTH.coilseq.lupas_142015-04-17 21:04 11KCOILS output, window length 14
[ ]jp_mO_pdTH.coilseq.lupas_212015-04-17 21:04 11KCOILS output, window length 21
[ ]jp_mO_pdTH.coilseq.lupas_282015-04-17 21:04 11KCOILS output, window length 28
[ ]jp_mO_pdTH.concise2015-04-17 21:04 481KPrediction: coiled-coil, solvent, alignment
[ ]jp_mO_pdTH.concise.blc2015-04-17 21:04 243KBLC format prediction and alignment data
[ ]jp_mO_pdTH.concise.fasta2015-04-17 21:04 246KPrediction: coiled-coil, solvent, alignment
[ ]jp_mO_pdTH.concise.pdf2015-04-17 21:05 1.7MPDF prediction and alignment data
[ ]jp_mO_pdTH.concise.ps2015-04-17 21:04 30MPrediction: coiled-coil, solvent, alignment
[ ]jp_mO_pdTH.fasta2015-04-17 20:59 274 Input query sequence in FASTA format
[ ]jp_mO_pdTH.full_MSA.fasta2015-04-17 21:03 13MFull MSA before JPred filters in FASTA
[TXT]jp_mO_pdTH.full_MSA.fasta.noGaps.html2015-04-17 21:05 1.5MFull MSA before JPred filters in FASTA
[TXT]jp_mO_pdTH.full_MSA.fasta.withGaps.html2015-04-17 21:05 35MFull MSA before JPred filters in FASTA
[ ]jp_mO_pdTH.hmm2015-04-17 21:04 48KHHMer2 profile of the alignment
[TXT]jp_mO_pdTH.html2015-04-17 21:04 430KHTML prediction and alignment data
[ ]jp_mO_pdTH.input2015-04-17 18:53 265 Raw input data for analysis
[ ]jp_mO_pdTH.jalview2015-04-17 21:04 5.8KJalview annotation file for alignment
[ ]jp_mO_pdTH.jnet2015-04-17 21:04 9.4KJnet secondary structure output
[TXT]jp_mO_pdTH.profile2015-04-17 21:02 41KPSIBLAST profile from alignment
[ ]jp_mO_pdTH.pssm2015-04-17 21:04 55KPSIBLAST PSSM for Jnet
[TXT]jp_mO_pdTH.results.html2016-02-15 12:21 111KJPred results page
[TXT]jp_mO_pdTH.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_mO_pdTH.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_mO_pdTH.seq2015-04-17 18:53 274 Sequence data file
[TXT]jp_mO_pdTH.simple.html2015-04-17 21:04 1.8KBrief HTML: sequence and prediction only
[TXT]jp_mO_pdTH.svg.html2015-04-17 21:05 103KJalview SVG summary of results
[ ]jp_mO_pdTH.tar.gz2015-04-17 21:05 13MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.