JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:13 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3ksna_.name2015-04-17 19:29 0 Job name flag file
[ ]jp_onCs7ID.align2015-04-17 22:13 199KPSIBLAST alignment in FASTA format
[TXT]jp_onCs7ID.als2015-04-17 22:13 3.7KAlscript command file for PS/PDF output
[ ]jp_onCs7ID.blast.gz2015-04-17 22:12 2.1MCompressed PSIBLAST output file
[TXT]jp_onCs7ID.coils.csv2015-04-17 22:13 1.1KCOILS output in CSV format
[ ]jp_onCs7ID.coilseq.lupas_142015-04-17 22:13 7.4KCOILS output, window length 14
[ ]jp_onCs7ID.coilseq.lupas_212015-04-17 22:13 7.4KCOILS output, window length 21
[ ]jp_onCs7ID.coilseq.lupas_282015-04-17 22:13 7.4KCOILS output, window length 28
[ ]jp_onCs7ID.concise2015-04-17 22:13 390KPrediction: coiled-coil, solvent, alignment
[ ]jp_onCs7ID.concise.blc2015-04-17 22:13 199KBLC format prediction and alignment data
[ ]jp_onCs7ID.concise.fasta2015-04-17 22:13 201KPrediction: coiled-coil, solvent, alignment
[ ]jp_onCs7ID.concise.pdf2015-04-17 22:13 1.3MPDF prediction and alignment data
[ ]jp_onCs7ID.concise.ps2015-04-17 22:13 24MPrediction: coiled-coil, solvent, alignment
[ ]jp_onCs7ID.fasta2015-04-17 22:06 192 Input query sequence in FASTA format
[ ]jp_onCs7ID.full_MSA.fasta2015-04-17 22:12 4.4MFull MSA before JPred filters in FASTA
[TXT]jp_onCs7ID.full_MSA.fasta.noGaps.html2015-04-17 22:13 767KFull MSA before JPred filters in FASTA
[TXT]jp_onCs7ID.full_MSA.fasta.withGaps.html2015-04-17 22:13 15MFull MSA before JPred filters in FASTA
[ ]jp_onCs7ID.hmm2015-04-17 22:13 33KHHMer2 profile of the alignment
[TXT]jp_onCs7ID.html2015-04-17 22:13 411KHTML prediction and alignment data
[ ]jp_onCs7ID.input2015-04-17 19:29 184 Raw input data for analysis
[ ]jp_onCs7ID.jalview2015-04-17 22:13 4.4KJalview annotation file for alignment
[ ]jp_onCs7ID.jnet2015-04-17 22:13 6.5KJnet secondary structure output
[TXT]jp_onCs7ID.profile2015-04-17 22:10 29KPSIBLAST profile from alignment
[ ]jp_onCs7ID.pssm2015-04-17 22:13 38KPSIBLAST PSSM for Jnet
[TXT]jp_onCs7ID.results.html2016-02-15 12:21 81KJPred results page
[TXT]jp_onCs7ID.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_onCs7ID.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_onCs7ID.seq2015-04-17 19:29 192 Sequence data file
[TXT]jp_onCs7ID.simple.html2015-04-17 22:13 1.6KBrief HTML: sequence and prediction only
[TXT]jp_onCs7ID.svg.html2015-04-17 22:13 73KJalview SVG summary of results
[ ]jp_onCs7ID.tar.gz2015-04-17 22:13 5.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.